View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920-Insertion-9 (Length: 603)
Name: NF4920-Insertion-9
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 374
Target Start/End: Original strand, 29580256 - 29580604
Alignment:
| Q |
7 |
acttatatccacgcacaaccagaagcacccaattcatagtttaagctaaaggattaaaaa---cagcttttattgtctaagttctatacannnnnnnnnn |
103 |
Q |
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| T |
29580256 |
acttatatccacgcacaaccagaagcacccaattcatagtttaagctaaaggattaaaaatgacagcttttattgtctaagttctatacattttttatat |
29580355 |
T |
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| Q |
104 |
nnnnnnnnnctatataagaaataagcaagagtgcaggactacttagaagcagttactctgatggatatcaactaggacctaatttttgatttcgtttagg |
203 |
Q |
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| T |
29580356 |
attttttt--tatataagaaataagcaagagtgcaggactacttagaagcagttactctgatggatatcaactaggacctaattttttatttcgtttagg |
29580453 |
T |
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| Q |
204 |
ctaatattaattgttagcaaactggtggttatgttaattctcaggatttaaactctagacctcatggttacaagtcctaccgtctccgccaaatcatcaa |
303 |
Q |
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| T |
29580454 |
ctaatattaattgtt--------------------aattctcaggatttgaactctagacctcatggttacaagtcctaccgtctccgccaaatcatcaa |
29580533 |
T |
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| Q |
304 |
ttgagtttcccagtaggacctagatgcagaactcggttaacattttacatattttttgagacaatacaagt |
374 |
Q |
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| T |
29580534 |
ttgagtttcccagtaggacctagatgcagaactcggttaacattttacatattttttgagacaatacaagt |
29580604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 439 - 603
Target Start/End: Original strand, 29580669 - 29580833
Alignment:
| Q |
439 |
ttcctacacttgattttaagctaaaggattcaaatggttgcaacctcctgccttttcttctg-gtatattttcaaaaagaagattaaaatttttaaggac |
537 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |
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| T |
29580669 |
ttcctacatttgattttaagctaaaggattcaaatggttacaacctcctgccttttcttctgagtatattttcaaaaagaagattaaattttttaag-ac |
29580767 |
T |
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| Q |
538 |
taatcaataacctattcaaagtagaagtttaatagccttttgaaacagtaattcatatgcaatgtc |
603 |
Q |
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| T |
29580768 |
taatcaataacctattcagagtagaagtttaatagccttttgaaacagtaattcatatgcattgtc |
29580833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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