View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4920_high_1 (Length: 492)

Name: NF4920_high_1
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4920_high_1
NF4920_high_1
[»] chr5 (2 HSPs)
chr5 (20-478)||(4362800-4363258)
chr5 (20-478)||(4370603-4371061)
[»] chr4 (1 HSPs)
chr4 (49-411)||(41043862-41044224)


Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Original strand, 4362800 - 4363258
Alignment:
Q  20 attcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4362800 attcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcac 4362899  T
Q  120 cacctgccatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcattatccttcatttccatgcatgt 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4362900 cacctgcaatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcattatccttcatttccatgcatgt 4362999  T
Q  220 gaaatttagtataactccatgttttgcaagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgca 319  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4363000 gaaattcaatataactccatgttttgctagcatttgtgctattggtatataaccatcatgaaactttgtgttatagtaacctgcagttaattcagttgca 4363099  T
Q  320 tgtgatcttgcattgtaatgccaatgaattccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4363100 tgtgatcttgcattgtaatgccaatgaattccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttct 4363199  T
Q  420 caccatgttcaacaagtttgcttgagtaccaatcaaggaagaaatctccatattctgtg 478  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4363200 caccatgttcaacaagcttgcttgagtaccaatcaaggaagaaatctccatattctgtg 4363258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Original strand, 4370603 - 4371061
Alignment:
Q  20 attcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcac 119  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4370603 attcttaaataagtaaaagcacttaatccacttgtagacaaaacttgaccataagcacttgaatcatatctctccaatgcattctcaccagcaagttcac 4370702  T
Q  120 cacctgccatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcattatccttcatttccatgcatgt 219  Q
    ||||||| ||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||  | |||||||||||||||||||||||||||||||||    
T  4370703 cacctgcaatctttgttgccatcttcacttgattcaccaatccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgt 4370802  T
Q  220 gaaatttagtataactccatgttttgcaagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgca 319  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4370803 gaaattcaatataactccatgttttgctagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgca 4370902  T
Q  320 tgtgatcttgcattgtaatgccaatgaattccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4370903 tgtgatcttgcattgtaatgccaatgaattccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttct 4371002  T
Q  420 caccatgttcaacaagtttgcttgagtaccaatcaaggaagaaatctccatattctgtg 478  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4371003 caccatgttcaacaagcttgcttgagtaccaatcaaggaagaaatctccatattctgtg 4371061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 411
Target Start/End: Complemental strand, 41044224 - 41043862
Alignment:
Q  49 acttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcaccacctgccatctttgttgccattctcact 148  Q
    ||||||||||||||||||| ||||  ||| |||||||||||||||||  ||||| || |||||||||||   |   ||||| ||||||||| |  | |||    
T  41044224 acttgttgacaaaacttgagcatatccacctgaatcatatctctccagtgcattttccccagcaagttctatattagccatttttgttgccttcttgact 41044125  T
Q  149 tgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcattatccttcatttccatgcatgtgaaatttagtataactccatgttttgcaa 248  Q
    || |  || || |||||||| ||||| || ||||  | |||||||||  | || |||||||||||||| |||||||| |  | |||  |||| |||||||    
T  41044124 tggtgaactaacccttctggcgaacagttagcatgtccaggttgttctctgtctttcatttccatgcaggtgaaattgaagacaacgtcatggtttgcaa 41044025  T
Q  249 gcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaat 348  Q
     |||||  || ||||| | ||| ||||||| |   || |||||||||||||| ||||||| ||||| ||| || || ||||   ||||||||||||| ||    
T  41044024 acattttggcaattggaagatacccatcattatgtctagtgttatagtaaccagcagttagttcagctgcgtgcgaccttgatctgtaatgccaatggat 41043925  T
Q  349 tccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaag 411  Q
    ||| || | |||  ||||||||||||| |||  ||| ||||||||   ||| |||||||||||    
T  41043924 tcccgcaactttaccagatagtttcacaccagatgtctggaatatttctttggctgatacaag 41043862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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