View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4920_high_21 (Length: 217)

Name: NF4920_high_21
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4920_high_21
NF4920_high_21
[»] chr7 (5 HSPs)
chr7 (17-156)||(37362425-37362564)
chr7 (17-69)||(1971308-1971360)
chr7 (18-79)||(7841452-7841512)
chr7 (106-148)||(7841406-7841448)
chr7 (106-168)||(1971188-1971248)
[»] chr3 (7 HSPs)
chr3 (18-156)||(53689349-53689487)
chr3 (17-167)||(52311477-52311629)
chr3 (17-69)||(52130972-52131024)
chr3 (87-162)||(14459163-14459238)
chr3 (111-167)||(12812825-12812881)
chr3 (89-156)||(25489586-25489653)
chr3 (88-149)||(45458391-45458452)
[»] chr4 (17 HSPs)
chr4 (17-69)||(41810374-41810426)
chr4 (87-167)||(14209363-14209443)
chr4 (87-167)||(14210314-14210394)
chr4 (87-167)||(14211283-14211363)
chr4 (87-167)||(14212234-14212314)
chr4 (87-167)||(14214171-14214251)
chr4 (87-167)||(14215140-14215220)
chr4 (87-167)||(14216109-14216189)
chr4 (87-167)||(14217060-14217140)
chr4 (87-167)||(14218011-14218091)
chr4 (87-167)||(14219950-14220030)
chr4 (87-167)||(14220901-14220981)
chr4 (87-167)||(14221870-14221950)
chr4 (87-167)||(14222839-14222919)
chr4 (87-167)||(14213203-14213283)
chr4 (87-167)||(14218981-14219061)
chr4 (112-162)||(41810276-41810326)
[»] chr1 (4 HSPs)
chr1 (17-69)||(7607901-7607953)
chr1 (17-69)||(31770889-31770941)
chr1 (87-156)||(50290541-50290610)
chr1 (87-156)||(40981489-40981558)
[»] chr2 (1 HSPs)
chr2 (87-167)||(31409599-31409679)
[»] chr8 (3 HSPs)
chr8 (17-61)||(19962262-19962308)
chr8 (111-149)||(29729269-29729307)
chr8 (122-154)||(19962172-19962204)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 37362425 - 37362564
Alignment:
Q  17 gagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaaacaatggagaagaagaggttttgtttccctatgtgggtgtgtcaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  37362425 gagaagaagagggaagcatggggctctgtagagtttgcatcagtattgaacaaataatggagaagaagaggttttgtttccctatgcgcgtgtgtcaatt 37362524  T
Q  117 ttcaaggagtgagatttgatcaacggctgatgtactaacc 156  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  37362525 ttcaaggagtgagatttgatcaacggctgatgtgctaacc 37362564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 1971360 - 1971308
Alignment:
Q  17 gagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaa 69  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1971360 gagaagaagagggaagcatggggctctgtagagtttgcattggtattgaacaa 1971308  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 7841512 - 7841452
Alignment:
Q  18 agaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaaacaatggaga 79  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||    
T  7841512 agaagaagagggaagcatggggttctgtagagtttgcat-ggtattgaacaaataaaggaga 7841452  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 7841448 - 7841406
Alignment:
Q  106 gtgtgtcaattttcaaggagtgagatttgatcaacggctgatg 148  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  7841448 gtgtttcaattttcaaggagtgagatttgatcaacggctgatg 7841406  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 1971248 - 1971188
Alignment:
Q  106 gtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcattat 168  Q
    |||| ||||||||||| ||||||  ||||||||||||||||||| |||||| ||||| |||||    
T  1971248 gtgtatcaattttcaaagagtga--tttgatcaacggctgatgtgctaacctcccctaattat 1971188  T

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Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 53689487 - 53689349
Alignment:
Q  18 agaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaaacaatggagaagaagaggttttgtttccctatgtgggtgtgtcaattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| | |||||| |||||    
T  53689487 agaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaaataatagagaagaaggggttttgtttccctatgcgcgtgtgttaattt 53689388  T
Q  118 tcaaggagtgagatttgatcaacggctgatgtactaacc 156  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  53689387 tcaaggagtgagatttgatcaatggctgatgtgctaacc 53689349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 52311477 - 52311629
Alignment:
Q  17 gagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaaacaatggagaagaagaggttttgtttccc--tatgtgggtgtgtcaa 114  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||| |  ||||||||    
T  52311477 gagaagaagagggcaacatggggctctgtagagtttgcatcggtattgaacaaataatggagaagaagaggttttgtttccccatatgcgcatgtgtcaa 52311576  T
Q  115 ttttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||    
T  52311577 ttttcaaggagtgagatttgatcaacgactgatgtgctaacctcccctaatta 52311629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 52131024 - 52130972
Alignment:
Q  17 gagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaa 69  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52131024 gagaagaagagggaagcatggggcactgtagagtttgcatcggtattgaacaa 52130972  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 14459163 - 14459238
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccct 162  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  14459163 gttttgtttccctatgctcgtgtatcaattttcaaggagtgagatttgatcaacgactgatgtgctaacctcccct 14459238  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 12812825 - 12812881
Alignment:
Q  111 tcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||    
T  12812825 tcaattttcaatgagtgagatttgatcaacggctgatgtgctaacctcccctaatta 12812881  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 25489653 - 25489586
Alignment:
Q  89 tttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaacc 156  Q
    ||||||||||||||   |||| |||||||| ||| ||||||||||||| |||||||||||||||||||    
T  25489653 tttgtttccctatgcacgtgtttcaatttttaagaagtgagatttgataaacggctgatgtactaacc 25489586  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 45458391 - 45458452
Alignment:
Q  88 ttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgt 149  Q
    |||||||| |||| ||| |||| ||||||||||||||||||||||||||||| |||| ||||    
T  45458391 ttttgttttcctacgtgtgtgtttcaattttcaaggagtgagatttgatcaagggctcatgt 45458452  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 41810426 - 41810374
Alignment:
Q  17 gagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaa 69  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  41810426 gagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa 41810374  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14209363 - 14209443
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14209363 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14209443  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14210314 - 14210394
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14210314 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14210394  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14211283 - 14211363
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14211283 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14211363  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14212234 - 14212314
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14212234 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14212314  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14214171 - 14214251
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14214171 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14214251  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14215140 - 14215220
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14215140 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14215220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14216109 - 14216189
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14216109 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14216189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14217060 - 14217140
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14217060 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14217140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14218011 - 14218091
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14218011 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14218091  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14219950 - 14220030
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14219950 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14220030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14220901 - 14220981
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14220901 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14220981  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14221870 - 14221950
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14221870 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14221950  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14222839 - 14222919
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14222839 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14222919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14213203 - 14213283
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| |  ||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14213203 gttttgttttcctatgcgcatgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14213283  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 14218981 - 14219061
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| |  ||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  14218981 gttttgttttcctatgcgcatgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 14219061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 41810326 - 41810276
Alignment:
Q  112 caattttcaaggagtgagatttgatcaacggctgatgtactaaccacccct 162  Q
    |||||||||||||||||||||||||||| || |||| | |||||| |||||    
T  41810326 caattttcaaggagtgagatttgatcaatggttgatatgctaaccgcccct 41810276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 7607901 - 7607953
Alignment:
Q  17 gagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaa 69  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  7607901 gagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa 7607953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 31770889 - 31770941
Alignment:
Q  17 gagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaa 69  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  31770889 gagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa 31770941  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 50290610 - 50290541
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaacc 156  Q
    |||||||||||||||| | || | ||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  50290610 gttttgtttccctatgagcgtctatcaattttcaaggagtgagattttatcaacgactgatgtgctaacc 50290541  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 40981489 - 40981558
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaacc 156  Q
    |||| ||||||||||| | |||| |||||||| || ||||||| |||||||||||||||| || ||||||    
T  40981489 gtttggtttccctatgcgcgtgtatcaatttttaaagagtgagttttgatcaacggctgaagtgctaacc 40981558  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 31409599 - 31409679
Alignment:
Q  87 gttttgtttccctatgtgggtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtactaaccacccctcatta 167  Q
    ||||||||| |||||| | |||| |||||||||||||| |||||||||||||| |||| |||| |||||| ||||| ||||    
T  31409599 gttttgttttcctatgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaatta 31409679  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 19962308 - 19962262
Alignment:
Q  17 gagaagaagagggaagcat--ggggctctgtagagtttgcatcggta 61  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||    
T  19962308 gagaagaagagggaagcatatggggctctgtagagtttgcatcggta 19962262  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 29729269 - 29729307
Alignment:
Q  111 tcaattttcaaggagtgagatttgatcaacggctgatgt 149  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  29729269 tcaattttcatggagtgagatttgatcaacggttgatgt 29729307  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 19962204 - 19962172
Alignment:
Q  122 ggagtgagatttgatcaacggctgatgtactaa 154  Q
    |||||||||||||||||||||||||| ||||||    
T  19962204 ggagtgagatttgatcaacggctgatatactaa 19962172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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