View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920_high_9 (Length: 295)
Name: NF4920_high_9
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 3338154 - 3338425
Alignment:
| Q |
16 |
aggaagagaacagagatcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgata |
115 |
Q |
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| T |
3338154 |
aggaagagaacagagatcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgata |
3338253 |
T |
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| Q |
116 |
ataatatgatattaatcacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3338254 |
ataatatgatattaatcacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgt |
3338353 |
T |
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| Q |
216 |
cggc--nnnnnnnnnnnntatgctccatccaatgcactcatggtggatcccacaa-ccctcctcctcttcat |
284 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
3338354 |
cggcctctctctctctcttatgctccatccaatgcactcatggtggaccccacaacccctcctcctcttcat |
3338425 |
T |
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