View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920_low_10 (Length: 276)
Name: NF4920_low_10
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 31959615 - 31959870
Alignment:
| Q |
1 |
cagaacaattctccgagcaagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagcctcacaaccaatcaaaccaagagacgcagctct |
100 |
Q |
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| T |
31959615 |
cagagcaattctccgagcaagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagcctcacaaccaatcaaaccaagagacgcagctct |
31959714 |
T |
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| Q |
101 |
catgcaagccacagagaatcaagccctaggacaaacccaaaagggcagtccagcctccgtgatgcaatcagcagctgcagtaaacaccgctgccggcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31959715 |
catgcaagccacagagaatcaagccctaggacaaacccaaaagggcagtccagcctccgtgatgcaatcagcagctgcagtaaacaccgctgccggcctc |
31959814 |
T |
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| Q |
201 |
gtaagccacgaagacatctcagacatagcaaaaaaccaaggcatgagtgtctccaa |
256 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31959815 |
gtaagccacggagacatctcagacatagcaaaaaaccaaggcatgagtgtctccaa |
31959870 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 11248075 - 11248026
Alignment:
| Q |
18 |
caagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagc |
67 |
Q |
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||||||||||||||||| ||||| |||||||| ||||| ||||| ||||| |
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| T |
11248075 |
caagaacccatcaaatacggtgaagttttcaatgtctccggtgacttagc |
11248026 |
T |
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