View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4920_low_11 (Length: 263)

Name: NF4920_low_11
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4920_low_11
NF4920_low_11
[»] chr1 (3 HSPs)
chr1 (19-230)||(31770753-31770964)
chr1 (19-99)||(7607896-7607976)
chr1 (74-131)||(14184882-14184939)
[»] chr4 (1 HSPs)
chr4 (19-230)||(41810351-41810562)
[»] chr3 (3 HSPs)
chr3 (25-131)||(52130955-52131061)
chr3 (42-99)||(53689436-53689493)
chr3 (42-101)||(52311470-52311529)
[»] chr7 (3 HSPs)
chr7 (42-124)||(37362394-37362477)
chr7 (42-95)||(1971308-1971361)
chr7 (42-93)||(7841462-7841512)
[»] chr8 (1 HSPs)
chr8 (50-104)||(19962262-19962318)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 31770964 - 31770753
Alignment:
Q  19 gttattatcacacctctccattgttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacat 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31770964 gttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacat 31770865  T
Q  119 cttcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccannnnnnngttgctgttatttctgtactgtatatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||    
T  31770864 cttcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccatttttttgttgctgtaatttctgtactgtatatc 31770765  T
Q  219 ttcctgatgttg 230  Q
    ||||||||||||    
T  31770764 ttcctgatgttg 31770753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 7607976 - 7607896
Alignment:
Q  19 gttattatcacacctctccattgttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctct 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7607976 gttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctct 7607896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 14184882 - 14184939
Alignment:
Q  74 ccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaaatgagaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14184882 ccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaaattagaa 14184939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 41810351 - 41810562
Alignment:
Q  19 gttattatcacacctctccattgttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacat 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41810351 gttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacat 41810450  T
Q  119 cttcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccannnnnnngttgctgttatttctgtactgtatatc 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||    
T  41810451 cttcaaatgagaagtattgtagatatattgctttactaccatgctttgacgggtatgagtctcccatttttttgttgctgtaatttctgtactgtatatc 41810550  T
Q  219 ttcctgatgttg 230  Q
    ||||||||||||    
T  41810551 ttcctgatgttg 41810562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 52130955 - 52131061
Alignment:
Q  25 atcacacctctccattgttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaa 124  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52130955 atcacacctctccattattgttcaataccgatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacatcatcaa 52131054  T
Q  125 atgagaa 131  Q
    |||||||    
T  52131055 atgagaa 52131061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 53689436 - 53689493
Alignment:
Q  42 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctct 99  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  53689436 ttgttcaataccgatgcaaactctacagagccccatgcttccctcttcttcttcctct 53689493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 52311529 - 52311470
Alignment:
Q  42 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgt 101  Q
    |||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||    
T  52311529 ttgttcaataccgatgcaaactctacagagccccatgttgccctcttcttctccctctgt 52311470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 37362477 - 37362394
Alignment:
Q  42 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgattatacatcttcaa 124  Q
    |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  37362477 ttgttcaatactgatgcaaactctacagagccccatgcttccctcttcttctccctctgtcacattttgattaaacatcttcaa 37362394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 1971308 - 1971361
Alignment:
Q  42 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctcc 95  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  1971308 ttgttcaataccaatgcaaactctacagagccccatgcttccctcttcttctcc 1971361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 7841462 - 7841512
Alignment:
Q  42 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttct 93  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  7841462 ttgttcaatacc-atgcaaactctacagaaccccatgcttccctcttcttct 7841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 19962262 - 19962318
Alignment:
Q  50 tacccatgcaaactctacagtgccccat--gcttccctcttcttctccctctgtcac 104  Q
    |||| ||||||||||||||| |||||||  ||||||||||||||||||||| |||||    
T  19962262 taccgatgcaaactctacagagccccatatgcttccctcttcttctccctccgtcac 19962318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University