View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920_low_12 (Length: 251)
Name: NF4920_low_12
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920_low_12 |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 32475305 - 32475164
Alignment:
| Q |
103 |
cgtttgatgcatttgagattgttataattaatgcatgtatgttgttgaaattaaattacttgttttaaaactcgtacttcgtagggtgaaagacaattca |
202 |
Q |
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| T |
32475305 |
cgtttgatgcatttgagattgttataattaatgcatgtatgttgttgaaattaaattacttgttttaaaactcgtacttcatagggtgaaagacaattca |
32475206 |
T |
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| Q |
203 |
tattatataacctgaacttgtcaagtacgtgatttttctgtg |
244 |
Q |
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| T |
32475205 |
tattatataacctgaacttgtcaagtacgtgatttttttgtg |
32475164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32475405 - 32475368
Alignment:
| Q |
1 |
ataaggactttgctaaatgaaccagagaaagaagttac |
38 |
Q |
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| T |
32475405 |
ataaggactttgctaaatgaaccagagaaagaagttac |
32475368 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 32427650 - 32427747
Alignment:
| Q |
106 |
ttgatgcatttgagattgttataattaatgcatgtatgttgttgaaattaaattacttgttttaaaactcgtacttcgtagggtgaaagacaattcatat |
205 |
Q |
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| T |
32427650 |
ttgatgtatttgagattgttatatttaata----tatgtcgttcaaattaaattacccgtgttaaaattcgtactttgtagggtgagagacaattcagat |
32427745 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 9074560 - 9074455
Alignment:
| Q |
103 |
cgtttgatgcatttgagattgttataattaatgcatgtatgttgttgaaattaaattacttgttttaaaactcgtacttcgtagggtgaaagacaattca |
202 |
Q |
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| T |
9074560 |
cgtttgatgtatttgcgattgttttatttaatg----tatgttgctgaaattaaatttcatgtgttaaaacttgtactttgtagggtgaaggacaaatca |
9074465 |
T |
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| Q |
203 |
tattatataa |
212 |
Q |
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|||||||| |
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| T |
9074464 |
acttatataa |
9074455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 36071995 - 36071939
Alignment:
| Q |
138 |
tgtatgttgttgaaattaaattacttgttttaaaactcgtacttcgtagggtgaaag |
194 |
Q |
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| T |
36071995 |
tgtatgtcgttgaaattaaattacatttgttaaaactcatactttgtagggtgaaag |
36071939 |
T |
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Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 113123 - 113050
Alignment:
| Q |
171 |
aactcgtacttcgtagggtgaaagacaattcatattatataacctgaacttgtcaagtacgtgatttttctgtg |
244 |
Q |
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| T |
113123 |
aactcgtactttgtagggtgaaggacaatttagcttatataatttgaatatgtcaagtacatgatttttctgtg |
113050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 17018540 - 17018617
Alignment:
| Q |
167 |
ttaaaactcgtacttcgtagggtgaaagacaattcatattatataacctgaacttgtcaagtacgtgatttttctgtg |
244 |
Q |
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| T |
17018540 |
ttaaaactcgtgctttgtaaggtgtaggacaattcatattatataatctgaaccagtcaagtacatgaattttttgtg |
17018617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 17548977 - 17549054
Alignment:
| Q |
167 |
ttaaaactcgtacttcgtagggtgaaagacaattcatattatataacctgaacttgtcaagtacgtgatttttctgtg |
244 |
Q |
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| T |
17548977 |
ttaaaactcgtgctttgtaaggtgtaggacaattcatattatataatctgaaccagtcaagtacatgaattttttgtg |
17549054 |
T |
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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 109634 - 109694
Alignment:
| Q |
137 |
atgtatgttgttgaaattaaattacttgttttaaaactcgtacttcgtagggtgaaagaca |
197 |
Q |
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| T |
109634 |
atgtatgttgttgatattaaattacatatgttaaaactcgtattttgtagggtgaaggaca |
109694 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 18043788 - 18043664
Alignment:
| Q |
103 |
cgtttgatgcatttgagattgttataattaatgcatgtatgttgttgaaattaaattacttgttttaaaactcgtacttcgtagggtgaaagac-aattc |
201 |
Q |
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||||||||| |||| ||||||||||| ||| ||||||| |||||||||||||||| ||| ||||||| | ||| | ||||||| |||| | ||||| |
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| T |
18043788 |
cgtttgatgtatttaagattgttatattta----ttgtatgtcgttgaaattaaattacatgtgttaaaacacataccttgtagggtcaaagcctaattc |
18043693 |
T |
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| Q |
202 |
atattatataacctgaacttgtcaagtac |
230 |
Q |
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| T |
18043692 |
agattatataatatgaacctgtctagtac |
18043664 |
T |
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Target: scaffold0150 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 11005 - 10932
Alignment:
| Q |
166 |
tttaaaactcgtacttcgtagggtgaaagacaattcatattatataacctgaacttgtcaagtacgtgattttt |
239 |
Q |
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| T |
11005 |
tttaaaactcgtgctttgtagggtgcaggacaattctaattatataatctgaaccagtcaagtacatgaatttt |
10932 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 15248086 - 15247990
Alignment:
| Q |
146 |
gttgaaattaaattacttgttttaaaactcgtacttcgtagggtgaaag-acaattcatattatataacctgaacttgtcaagtacgtgatttttct |
241 |
Q |
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|||||||||||||| | ||| ||||||||||||| | | | |||||||| || ||| || ||||||| ||||| |||||||||| |||||||||| |
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| T |
15248086 |
gttgaaattaaatttcatgtgttaaaactcgtacattgcatggtgaaagcccagttcgtagtatataatatgaacctgtcaagtacatgatttttct |
15247990 |
T |
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