View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920_low_13 (Length: 241)
Name: NF4920_low_13
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 8457944 - 8457717
Alignment:
| Q |
1 |
tatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457944 |
tatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcat |
8457845 |
T |
|
| Q |
101 |
ttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457844 |
ttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacat |
8457745 |
T |
|
| Q |
201 |
tggctttgctccttcaatatattctttc |
228 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
8457744 |
tggctttggtccttcaatatattctttc |
8457717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6827396 - 6827619
Alignment:
| Q |
1 |
tatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcat |
100 |
Q |
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|||||||||| ||||||||||||| ||||| |||||| |||| ||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
6827396 |
tatctgcaaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcat |
6827495 |
T |
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| Q |
101 |
ttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacag |
200 |
Q |
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| T |
6827496 |
ttatttcatgaatgagaattttaagc---ataccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaatactccccgacagataacag |
6827592 |
T |
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| Q |
201 |
tggctttgctccttcaatatattcttt |
227 |
Q |
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||| | ||||||||||||||| ||||| |
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| T |
6827593 |
tggttgtgctccttcaatatagtcttt |
6827619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9822748 - 9822525
Alignment:
| Q |
1 |
tatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcat |
100 |
Q |
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|
|||||||||| ||||||||||||| ||||| |||||| |||| ||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
9822748 |
tatctgcaaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcat |
9822649 |
T |
|
| Q |
101 |
ttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacag |
200 |
Q |
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| T |
9822648 |
ttatttcatgaatgagaattttaagc---ataccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaatactccccgacagataacag |
9822552 |
T |
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| Q |
201 |
tggctttgctccttcaatatattcttt |
227 |
Q |
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||| | ||||||||||||||| ||||| |
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| T |
9822551 |
tggttgtgctccttcaatatagtcttt |
9822525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 27964065 - 27964262
Alignment:
| Q |
26 |
gagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaag |
125 |
Q |
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||||| |||||| |||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
27964065 |
gagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttattc-atgaatgagaattttaag |
27964163 |
T |
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| Q |
126 |
cagtataccttggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacagtggctttgctccttcaatatattct |
225 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
27964164 |
ca---taccttggttatagtccaaagtagaaccgttgtagttgcaaacatccaaatactccccgacagataacagtggctttgctccttcaatatactct |
27964260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 18361362 - 18361425
Alignment:
| Q |
44 |
aaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttg |
107 |
Q |
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||||||| |||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
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| T |
18361362 |
aaaagaagtattgaaagggtaatgtattcacatgcttagtaaccaaaaagtattcatttatttg |
18361425 |
T |
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