View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920_low_15 (Length: 239)
Name: NF4920_low_15
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920_low_15 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 42191123 - 42190897
Alignment:
| Q |
13 |
aatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttgggatcctactgttagagatgttcatagccagaaaaccaacagatgagat |
112 |
Q |
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| T |
42191123 |
aatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttgggatcctactgttagagatgttcatagccagaaaaccaacagatgagat |
42191024 |
T |
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| Q |
113 |
tttcaaagaaggattaagcatgaaaaaatttgtatcataaatggatgagaagaaattactgaaggttgttgatcaaaggcttaggaaccattatagtgat |
212 |
Q |
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| T |
42191023 |
tttcaaagaaggattaagcatgaaaaaatttgtatcataaatggatgagaagaaattactgaaggttgttgatcaaaggcttaggaaccattatagtgat |
42190924 |
T |
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| Q |
213 |
ggtaacacagatgggatgcataaagtt |
239 |
Q |
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| T |
42190923 |
ggtaacacagatgggatgcataaagtt |
42190897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 42221975 - 42221798
Alignment:
| Q |
13 |
aatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttgggatcctactgttagagatgttcatagccagaaaaccaacagatgagat |
112 |
Q |
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| T |
42221975 |
aatatggtctaggaggcaaggcttcaactagtggtgatgtgtacagttttgggatcctactattggagatgttcatagccaaaaaaccaacaaatgaaat |
42221876 |
T |
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| Q |
113 |
tttcaaagaaggattaagcatgaaaaaatttgtatcataaatggatgagaagaaattactgaaggttgttgatcaaag |
190 |
Q |
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| T |
42221875 |
tttcaaagaggaattaagcatgaacagatttgcatcagacatggatgaaaagcaattattgaaggttgttgatcaaag |
42221798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 42209724 - 42209542
Alignment:
| Q |
13 |
aatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttgggatcctactgttagagatgttcatagccagaaaaccaacagatgagat |
112 |
Q |
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|||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||| | || || |
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| T |
42209724 |
aatatggtttaggaggcaaggcttcaactagtggtgatgtgtacagttttgggatcttactactagagatgttgatagctgaaaaaccaacaaacgaaat |
42209625 |
T |
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| Q |
113 |
tttcaaagaaggattaagcatgaaaaaatttgtatcataaatggatgagaagaaattactgaaggttgttgatcaaaggctta |
195 |
Q |
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| T |
42209624 |
gttcaaagaagaagtaagcatgaacagatttgtatcagacatggatgacaagcaattactaaaggttgttgatcaaaggctta |
42209542 |
T |
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