View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4920_low_16 (Length: 236)

Name: NF4920_low_16
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4920_low_16
NF4920_low_16
[»] chr2 (1 HSPs)
chr2 (1-222)||(32475391-32475612)
[»] chr7 (3 HSPs)
chr7 (41-197)||(18043916-18044069)
chr7 (41-153)||(2670068-2670180)
chr7 (41-121)||(5748207-5748287)
[»] chr6 (1 HSPs)
chr6 (77-152)||(20386841-20386916)
[»] chr4 (1 HSPs)
chr4 (51-149)||(9074698-9074796)
[»] chr1 (1 HSPs)
chr1 (78-137)||(48181334-48181393)
[»] chr5 (1 HSPs)
chr5 (77-138)||(36519646-36519707)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32475391 - 32475612
Alignment:
Q  1 tagcaaagtccttatttcttcttagtttctagactggatcaacttttatgaatatctttgaaagatctaatcaaataagcgttcaactcaatcggtcctt 100  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  32475391 tagcaaagtccttatttcttcgtattttctggactggatcaacttttatgaatatctttgaaagatctaatcaaataagcgtccaactcgatcggtcctt 32475490  T
Q  101 tagtaatttactaacaaaatatcgataacatggttctcgcgttgtcgtcgttccttagctacatttggtagaaattgactcttttggctgagtcgataat 200  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32475491 tagtaatgtactaacaaaatatcgataacatggttctcacgtcgtcgtcgttccttagctacatttggtagaaatggactcttttggctgagtcgataat 32475590  T
Q  201 ctacactgtccaccctccttat 222  Q
    |||||| |||||||||||||||    
T  32475591 ctacaccgtccaccctccttat 32475612  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 18043916 - 18044069
Alignment:
Q  41 aacttttatgaatatctttgaaagatctaatcaaataagcgttcaactcaatcggtcctttagtaatttactaacaaaatatcgataacatggttctcgc 140  Q
    ||||||| |||||||||| |||||| || | |||| ||| ||||||||||||||||||||||||| | |||| |||||||||||| || |||||| || |    
T  18043916 aacttttctgaatatcttcgaaagacctgaccaaagaagagttcaactcaatcggtcctttagtattgtactgacaaaatatcgagaatatggttttcac 18044015  T
Q  141 gttgtcgtcgttccttagctacatttggtagaaattgactcttttggctgagtcgat 197  Q
       |||||||||||| |||| |||||||  |||||  ||||||| | ||||||||||    
T  18044016 ---gtcgtcgttcctgagcttcatttggctgaaatgcactctttcgactgagtcgat 18044069  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 2670068 - 2670180
Alignment:
Q  41 aacttttatgaatatctttgaaagatctaatcaaataagcgttcaactcaatcggtcctttagtaatttactaacaaaatatcgataacatggttctcgc 140  Q
    ||||||| ||||||||||  |||||||| | |||  |||||| ||||||||||||||||||||||||  | | || |||||| || ||||| |||||| |    
T  2670068 aacttttttgaatatcttcaaaagatcttaccaatgaagcgtccaactcaatcggtcctttagtaatgcattgaccaaatattgagaacattgttctcac 2670167  T
Q  141 gttgtcgtcgttc 153  Q
    || ||| ||||||    
T  2670168 gtcgtcatcgttc 2670180  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 5748287 - 5748207
Alignment:
Q  41 aacttttatgaatatctttgaaagatctaatcaaataagcgttcaactcaatcggtcctttagtaatttactaacaaaata 121  Q
    |||||| ||||||||||||||||||| | | |||  ||| ||| |||||||||| |||||||| ||| |||| || |||||    
T  5748287 aactttcatgaatatctttgaaagatatgaccaacgaagagttaaactcaatcgatcctttagaaatatactgaccaaata 5748207  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 20386916 - 20386841
Alignment:
Q  77 aagcgttcaactcaatcggtcctttagtaatttactaacaaaatatcgataacatggttctcgcgttgtcgtcgtt 152  Q
    |||||| |||||| ||||||||||| ||||| ||||||| ||| ||||| |||||||||||| ||| |||||||||    
T  20386916 aagcgtccaactcgatcggtcctttggtaatgtactaaccaaagatcgagaacatggttctcacgtcgtcgtcgtt 20386841  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 9074698 - 9074796
Alignment:
Q  51 aatatctttgaaagatctaatcaaataagcgttcaactcaatcggtcctttagtaatttactaacaaaatatcgataacatggttctcgcgttgtcgtc 149  Q
    |||||||||||||||||| | |||| |||||| ||||||| | ||||| |||||| |||| | || |||||| || ||||||| |||| ||| ||||||    
T  9074698 aatatctttgaaagatctgaccaaagaagcgtccaactcagttggtccattagtattttattgactaaatattgagaacatggctctcacgtcgtcgtc 9074796  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 48181393 - 48181334
Alignment:
Q  78 agcgttcaactcaatcggtcctttagtaatttactaacaaaatatcgataacatggttct 137  Q
    ||||| |||||| |||| |||||||||| | ||||||| ||||||||| |||||||||||    
T  48181393 agcgtccaactcgatcgatcctttagtattgtactaaccaaatatcgagaacatggttct 48181334  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 36519707 - 36519646
Alignment:
Q  77 aagcgttcaactcaatcggtcctttagtaatttactaacaaaatatcgataacatggttctc 138  Q
    |||||| |||||| ||| ||||||||||| | |||| || ||||||||| ||||||||||||    
T  36519707 aagcgtccaactcgatcagtcctttagtattgtactgaccaaatatcgagaacatggttctc 36519646  T

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