View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4920_low_3 (Length: 443)
Name: NF4920_low_3
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 36061725 - 36062145
Alignment:
| Q |
18 |
atttggtgacagtatacacttatttatatcgatggtatatcaaacttaaactctagaaaagaaatccacaattatgaatctacgaccgtgatatgtaagc |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
36061725 |
atttggtgacggtatacacttatttatatcgacggtatatcaaacttaaactctagaaaagaaatccacaattatgagtctacgaccgtgatatgtgagc |
36061824 |
T |
|
| Q |
118 |
ccaaactcaannnnnnngatgtctccgcgttggtaatgtggccgcaatcgaggcctatttaactataaatctcagtaaaatcacagattacaacaaaacc |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36061825 |
ccaaactcaatttttttgatgtctccgcgttggtaatgtggccgcaatcgaggcctatttaactataaatctcagtaaaatcacagattacaacaaaacc |
36061924 |
T |
|
| Q |
218 |
gtgaacatgaccgcaaactcaatctaaaaccttgatatttaagcacatgagaactatctttgttctactttgaacccatgttcttgtatttctgtttctg |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36061925 |
gtgaacatgaccgcaacctcaatctaaaaccttgatatttaagcacatgagaactatctttgttctactttgaacccatgttcttgtatttctgtttctg |
36062024 |
T |
|
| Q |
318 |
ttatcaaatatatcagagttgtaacatgataaaaatac----tatatgcatctttaaggttaataaagtgaagaacttaagaatgtttaactaattgttc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36062025 |
ttatcaaatatatcagagttgtaacatgataaaaatactatatatatgcatctttaaggttaataaagtgaagaacttaagaatgtttaactaattgttc |
36062124 |
T |
|
| Q |
414 |
ttacatttactgaagtataat |
434 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36062125 |
ttacatttactgaagtataat |
36062145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University