View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920_low_5 (Length: 384)
Name: NF4920_low_5
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 52797681 - 52797319
Alignment:
| Q |
18 |
ccaattgcccaaacattcactaaaatttgtgtctcttttggaatgaagtagtctccaatcatgcaagagtccatggccatgtgaggaaccaaaaaaggaa |
117 |
Q |
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| T |
52797681 |
ccaattgcccaaacattcactaaaatttgtgtctcttttggaatgaagtagtctccaatcatgcaagagtccatggccatgtgaggaaccaaaaaaggaa |
52797582 |
T |
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| Q |
118 |
gaggtgggtggagtctcaacgtctccttgataactgctttgaggtatggaagactctctatgtccttttcttccattttcctatcagagcttattttgct |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52797581 |
gaggtgggtgaagtctcaacgtctccttgataactgctttgaggtatggaagactctctatgtccttttcttccattttcctatcagagcttattttgct |
52797482 |
T |
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| Q |
218 |
ccttagttccatttgcactttcaatagggttcttgggttgtgcagaagctccgccatcgcccattctagtgtgcttgttgtcgtgtctgtccctgcagtg |
317 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52797481 |
ccttagttccatttgcacttttgatagggttcttgggttgtgcagaagctccgccatcgcccattctagtgtgcttgttgtcgtgtctgtccctgcagtg |
52797382 |
T |
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| Q |
318 |
aacatttcctacaacacaataatattactatcaatgtcacaaactgccatgattcttctctct |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52797381 |
aacatttcctacaacacaataatattactatcaatgtcacaaactgccatgattcttctctct |
52797319 |
T |
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