View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4920_low_6 (Length: 362)

Name: NF4920_low_6
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4920_low_6
NF4920_low_6
[»] chr3 (9 HSPs)
chr3 (59-344)||(1436424-1436713)
chr3 (1-46)||(1436708-1436753)
chr3 (70-172)||(2146505-2146608)
chr3 (93-191)||(54942329-54942428)
chr3 (76-133)||(40036186-40036243)
chr3 (77-191)||(27393491-27393606)
chr3 (76-125)||(45241399-45241448)
chr3 (85-192)||(1764033-1764140)
chr3 (83-127)||(3416371-3416415)
[»] chr5 (4 HSPs)
chr5 (77-172)||(18523587-18523681)
chr5 (70-172)||(7448314-7448417)
chr5 (76-165)||(4876937-4877026)
chr5 (76-140)||(19500992-19501056)
[»] chr2 (7 HSPs)
chr2 (92-172)||(1537357-1537435)
chr2 (76-165)||(42791908-42791997)
chr2 (76-125)||(4437778-4437827)
chr2 (76-125)||(32023196-32023245)
chr2 (104-191)||(5790263-5790351)
chr2 (92-191)||(34830992-34831092)
chr2 (76-191)||(37329926-37330042)
[»] chr4 (9 HSPs)
chr4 (74-191)||(36608298-36608413)
chr4 (76-165)||(7479760-7479849)
chr4 (76-191)||(32448672-32448788)
chr4 (92-191)||(53305915-53306015)
chr4 (85-172)||(16554198-16554284)
chr4 (76-165)||(7479102-7479191)
chr4 (97-165)||(8138569-8138637)
chr4 (85-165)||(36650839-36650919)
chr4 (85-133)||(37709360-37709408)
[»] chr1 (7 HSPs)
chr1 (76-191)||(6851943-6852059)
chr1 (85-165)||(1114643-1114723)
chr1 (70-191)||(8400596-8400718)
chr1 (92-165)||(41039720-41039794)
chr1 (76-165)||(11916875-11916964)
chr1 (76-125)||(15357402-15357451)
chr1 (100-187)||(6134791-6134879)
[»] chr8 (5 HSPs)
chr8 (76-124)||(36016562-36016610)
chr8 (142-191)||(12961887-12961937)
chr8 (92-165)||(41312102-41312175)
chr8 (76-133)||(43776786-43776843)
chr8 (85-189)||(33452058-33452162)
[»] chr6 (2 HSPs)
chr6 (94-187)||(34975761-34975856)
chr6 (97-165)||(13444099-13444167)
[»] chr7 (3 HSPs)
chr7 (76-125)||(5228202-5228251)
chr7 (104-191)||(3341176-3341263)
chr7 (97-165)||(46208433-46208501)
[»] scaffold0533 (1 HSPs)
scaffold0533 (85-165)||(9720-9800)
[»] scaffold0159 (1 HSPs)
scaffold0159 (104-191)||(34636-34724)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 59 - 344
Target Start/End: Complemental strand, 1436713 - 1436424
Alignment:
Q  59 ttaatttgcatttcaataa----aaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatata 154  Q
    |||||| ||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1436713 ttaattcgcatttcaataaaaaaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatata 1436614  T
Q  155 gaatataaaatacattttaaatacccatattttattgaactgctattatacaaacaaaatttataaagttctatgttaatctaaaatattttattatgtc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  1436613 gaatataaaatacattttaaatacccatattttattgaactgctattatacaaactaaatttataaagttctatgttaatctaaaatattttattatgtg 1436514  T
Q  255 atttgtattattgtatatgtccatatgtatttctttcttatcacaacctttagtgggagaatgaggacacaactatttgacggactaaga 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1436513 atttgtattattgtatatgtccatatgtatttctttcttatcacaacctttagtgggagaatgaggacacaactatttgacggagtaaga 1436424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1436753 - 1436708
Alignment:
Q  1 cccaaagatatgtttagattacaatcacctcatttaagaattaatt 46  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  1436753 cccaaagatatgtttagattacaatcacctcacttaagaattaatt 1436708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 2146505 - 2146608
Alignment:
Q  70 ttcaataaaaaatatttcattcctttttaatttcaatgtcaatggtaat-taaatttgattatttcactattaacttaattatatagaatataaaataca 168  Q
    ||||| ||||| || || ||| ||||||||| |||||||||||| |||  | ||||||||||||| | |||||||||||| ||  ||||||||||||| |    
T  2146505 ttcaagaaaaagtagttaatttctttttaatctcaatgtcaatgataaaatcaatttgattattttattattaacttaatgattcagaatataaaatata 2146604  T
Q  169 tttt 172  Q
    ||||    
T  2146605 tttt 2146608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 54942329 - 54942428
Alignment:
Q  93 tttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaatacatttt-aaatacccatattttattg 191  Q
    |||||||||||||| |  ||  ||| ||||||| ||||||| | ||||||  || |||| |||||||||||||||||||| |||||||| ||||||||||    
T  54942329 tttttaatttcaatatttataataaataaattttattatttgattattaagatatttatttagaatataaaatacattttgaaatacccctattttattg 54942428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 40036243 - 40036186
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattattt 133  Q
    |||||||| |||||| |||| |||||| |||||||||| ||||||||||||| |||||    
T  40036243 aaaaaataattcatttctttataatttaaatgtcaatgataattaaatttgaatattt 40036186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 27393606 - 27393491
Alignment:
Q  77 aaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaa-tacattttaaa 175  Q
    ||||||| |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||| | || || || |||| ||||||| ||  |||||||    
T  27393606 aaaaataattcatttctttataatttaaatgtcaatgataattaaatttaaatattttgctattgattttataatttagagtataaaattaacttttaaa 27393507  T
Q  176 tacccatattttattg 191  Q
    || ||||| |||||||    
T  27393506 taaccatactttattg 27393491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 45241399 - 45241448
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaattt 125  Q
    |||||||| |||||| |||| |||||| |||||||||| |||||||||||    
T  45241399 aaaaaataattcatttctttataatttaaatgtcaatgataattaaattt 45241448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 1764140 - 1764033
Alignment:
Q  85 ttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat-acattttaaatacccata 183  Q
    |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||||| || || || || | |||||||| | |||||||||| |||||    
T  1764140 ttcatttctttataatttaaatgtcaatgataattaaatttaaatattttgctattaagtttataattta-agtataaaataaaattttaaataaccata 1764042  T
Q  184 ttttattga 192  Q
     ||||||||    
T  1764041 ctttattga 1764033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 3416415 - 3416371
Alignment:
Q  83 atttcattcctttttaatttcaatgtcaatggtaattaaatttga 127  Q
    |||||||| |||| | ||||||||||||||| |||||||||||||    
T  3416415 atttcatttctttattatttcaatgtcaatgataattaaatttga 3416371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 18523681 - 18523587
Alignment:
Q  77 aaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaatacatttt 172  Q
    ||||||| |||||| |||| |||||||||| |||||| |||  ||||| |||||||| | |||||||||||| || ||| ||||||||||||||||    
T  18523681 aaaaataattcatttctttctaatttcaatatcaatgataaaaaaatt-gattattttattattaacttaatgatttaggatataaaatacatttt 18523587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 7448417 - 7448314
Alignment:
Q  70 ttcaataaaaaatatttcattcctttttaatttcaatgtcaatggtaatta-aatttgattatttcactattaacttaattatatagaatataaaataca 168  Q
    ||||| ||||| || ||||||  |||||||||| ||| |||||| |||  | ||||||||||||| |  ||||||||||| || ||||||||||||||||    
T  7448417 ttcaagaaaaagtaattcatttatttttaattttaatatcaatgataaaaacaatttgattattttatcattaacttaatgatttagaatataaaataca 7448318  T
Q  169 tttt 172  Q
    ||||    
T  7448317 tttt 7448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 4876937 - 4877026
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    ||||| || |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||||| || || || |||| ||||||||    
T  4876937 aaaaattaattcatttctttataatttaaatgtcaatgataattaaatttaaatattttgctattaattttataatttagagtataaaat 4877026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 19500992 - 19501056
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactatt 140  Q
    |||||||| |||||| |||| |||||| || ||||||| ||||||||||| | |||||| |||||    
T  19500992 aaaaaataattcatttctttataatttaaaagtcaatgataattaaatttaaatatttcgctatt 19501056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 1537357 - 1537435
Alignment:
Q  92 ctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaatacatttt 172  Q
    |||||||||||||||||||||| |||||   ||| ||||||| | |||||||||||| || ||||| ||||||||||||||    
T  1537357 ctttttaatttcaatgtcaatgataattt--ttttattattttattattaacttaatgatttagaaaataaaatacatttt 1537435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 42791997 - 42791908
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||||||| |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||| | ||||| || |||| ||||||||    
T  42791997 aaaaaataattcatttctttataatttaaatgtcaatgataattaaatttaaatattttgctattgatttaataatttagagtataaaat 42791908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 4437827 - 4437778
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaattt 125  Q
    |||||||| |||||| |||| |||||| |||||||||| |||||||||||    
T  4437827 aaaaaataattcatttctttataatttaaatgtcaatgataattaaattt 4437778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 32023196 - 32023245
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaattt 125  Q
    |||||||| |||||| |||| |||||| |||||||||| |||||||||||    
T  32023196 aaaaaataattcatttctttctaatttaaatgtcaatgataattaaattt 32023245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 5790263 - 5790351
Alignment:
Q  104 aatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaa-tacattttaaatacccatattttattg 191  Q
    |||||||||| ||||||||||| | |||||  ||||||| || || || |||| ||||||| ||  ||||||||| |||||||||||||    
T  5790263 aatgtcaatgataattaaatttaaatattttgctattaattttataatttagagtataaaattaacttttaaataaccatattttattg 5790351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 34830992 - 34831092
Alignment:
Q  92 ctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaa-tacattttaaatacccatattttatt 190  Q
    |||| |||||| |||||||||| ||||||||||||| |||||   |||||| || || || ||||||| |||| ||  ||||||||| ||||| ||||||    
T  34830992 ctttataatttaaatgtcaatgataattaaatttgaatattttcttattaattttataatttagaataaaaaattaacttttaaataaccatactttatt 34831091  T
Q  191 g 191  Q
    |    
T  34831092 g 34831092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 37329926 - 37330042
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaataca-ttttaa 174  Q
    ||||| || |||||| |||| |||||| || ||||||| ||||||||||| | |||||  ||||| | ||||| || |||| ||||||||| | ||||||    
T  37329926 aaaaattaattcatttctttataatttaaaggtcaatgataattaaatttaaatattttgctattgatttaataatttagagtataaaataaacttttaa 37330025  T
Q  175 atacccatattttattg 191  Q
    ||| ||||  |||||||    
T  37330026 ataaccatgctttattg 37330042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 36608413 - 36608298
Alignment:
Q  74 ataaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaatacat-ttt 172  Q
    |||||||||| |||||| ||||||||| ||||| |||||   ||| ||| |||||||||| | ||| |||||||| || |||||||||||||| || |||    
T  36608413 ataaaaaataattcatttctttttaatatcaatatcaat---aataaaagttgattattttattatgaacttaatgatttagaatataaaataaatattt 36608317  T
Q  173 aaatacccatattttattg 191  Q
     | ||||||||||| ||||    
T  36608316 gattacccatatttcattg 36608298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 7479849 - 7479760
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    ||||| || |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||||| || || || |||||||||||||    
T  7479849 aaaaattaattcatttctttataatttaaatgtcaatgataattaaatttaaatatttttctattaattttataatttagaatataaaat 7479760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 32448788 - 32448672
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaa-tacattttaa 174  Q
    ||||| || |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||| | || || || |||| ||||||| || |||||||    
T  32448788 aaaaattaattcatttctttataatttaaatgtcaatgataattaaatttaaatattttgctattgattttataatttagagtataaaattaaattttaa 32448689  T
Q  175 atacccatattttattg 191  Q
    ||| |||| ||||||||    
T  32448688 ataaccatgttttattg 32448672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 53305915 - 53306015
Alignment:
Q  92 ctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaa-tacattttaaatacccatattttatt 190  Q
    |||| |||||| |||||||||| ||||||||||||| |||||   |||||| || || || |||||||||||| ||  ||||||||| ||||| ||||||    
T  53305915 ctttataatttaaatgtcaatgataattaaatttgaatattttcttattaattttataatttagaatataaaattaacttttaaataaccatactttatt 53306014  T
Q  191 g 191  Q
    |    
T  53306015 g 53306015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 16554284 - 16554198
Alignment:
Q  85 ttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaatacatttt 172  Q
    |||||| |||||||||||||||||||||  ||| | || ||||||| || | |||||| ||||| || |||||||| |||||||||||    
T  16554284 ttcatttctttttaatttcaatgtcaattataaatgaaattgattactttattattaatttaataatttagaatat-aaatacatttt 16554198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 7479191 - 7479102
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    ||||| || |||||| |||| |||||| |||||||||| ||||||||||| |  ||||  ||||||| || || || |||||||||||||    
T  7479191 aaaaattaattcatttctttataatttaaatgtcaatgataattaaatttaaacatttttctattaattttataatttagaatataaaat 7479102  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 8138569 - 8138637
Alignment:
Q  97 taatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||||| | |||||||| ||||||||||| | ||||| |||||||| || || || |||||||||||||    
T  8138569 taatttaagtgtcaatgataattaaatttaaatattttactattaattttataatttagaatataaaat 8138637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 36650839 - 36650919
Alignment:
Q  85 ttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||||| || || || |||| ||||||||    
T  36650839 ttcatttctttataatttaaatgtcaatgataattaaatttaaatatttttctattaattttataatttagagtataaaat 36650919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 37709408 - 37709360
Alignment:
Q  85 ttcattcctttttaatttcaatgtcaatggtaattaaatttgattattt 133  Q
    |||||| |||| |||||| |||||||||| ||||||||||||| |||||    
T  37709408 ttcatttctttataatttaaatgtcaatgataattaaatttgaatattt 37709360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 6852059 - 6851943
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaa-tacattttaa 174  Q
    |||||||  |||||| |||| |||||| |||||||||| |||||||||||||| |||| |||||| | || || || |||| ||||||| ||  ||||||    
T  6852059 aaaaaattattcatttctttataatttaaatgtcaatgataattaaatttgatcattttactattgattttataatttagagtataaaattaacttttaa 6851960  T
Q  175 atacccatattttattg 191  Q
    ||| || ||||||||||    
T  6851959 ataaccttattttattg 6851943  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 1114723 - 1114643
Alignment:
Q  85 ttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||||| |||| |||||| |||||| ||| ||||||||||||| |||||  ||||||| ||||| || |||| ||||||||    
T  1114723 ttcatttctttataatttaaatgtcgatgataattaaatttgaatattttgctattaatttaataatttagagtataaaat 1114643  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 8400596 - 8400718
Alignment:
Q  70 ttcaataaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaataca- 168  Q
    ||||| ||| |||| || ||| |||||||||||||||||  ||| ||| ||||||||||  ||| | ||||||||| ||||| || ||||||||| |||     
T  8400596 ttcaaaaaacaataattaatttctttttaatttcaatgtttatgataaataaatttgatagtttgattattaactttattatttacaatataaaa-acat 8400694  T
Q  169 -ttttaaatacccatattttattg 191  Q
     ||||| |||||||||||| ||||    
T  8400695 tttttagatacccatatttgattg 8400718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 41039794 - 41039720
Alignment:
Q  92 ctttttaatttcaatgtcaatggtaatta-aatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||||||||| || |||||||| |||  | ||||||||||||| | |||||||||||| || |||||||||||||    
T  41039794 ctttttaattccagtgtcaatgataaaaataatttgattattttattattaacttaatgatttagaatataaaat 41039720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 11916964 - 11916875
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    ||||| || |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||||| || || || |||| ||||||||    
T  11916964 aaaaattaattcatttctttctaatttaaatgtcaatgataattaaatttaaatattttgctattaattttataatttagagtataaaat 11916875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 15357451 - 15357402
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaattt 125  Q
    |||||||| |||||| |||| |||||| |||||||||| |||||||||||    
T  15357451 aaaaaataattcatttctttataatttaaatgtcaatgataattaaattt 15357402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 6134879 - 6134791
Alignment:
Q  100 tttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaatacatttt-aaatacccatatttt 187  Q
    ||||||| |||||| ||||||||||||| ||||  | |||||| |||||||| || |||| ||| | |||||| ||||| |||||||||    
T  6134879 tttcaatttcaatgataattaaatttgaatattctattattaatttaattatttataatacaaagttcattttcaaatagccatatttt 6134791  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 36016610 - 36016562
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatt 124  Q
    |||||||| |||||| |||| |||||| |||||||||||||||||||||    
T  36016610 aaaaaataattcatttctttataatttaaatgtcaatggtaattaaatt 36016562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 12961887 - 12961937
Alignment:
Q  142 acttaattatatagaatataaaatacatttt-aaatacccatattttattg 191  Q
    ||||||| || |||||||||||||||||||| |||||| ||||||||||||    
T  12961887 acttaatgatttagaatataaaatacattttcaaatactcatattttattg 12961937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 41312175 - 41312102
Alignment:
Q  92 ctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||| ||||||||||||||||| ||||||||||| | |||||  ||||||| || || || |||| ||||||||    
T  41312175 ctttataatttcaatgtcaatgataattaaatttaaatatttttctattaattttataatttagattataaaat 41312102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 43776843 - 43776786
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaatttgattattt 133  Q
    ||||| || |||||| |||| |||||| |||||||||| ||||||||||| |||||||    
T  43776843 aaaaattaattcatttctttataatttaaatgtcaatgataattaaatttaattattt 43776786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 33452162 - 33452058
Alignment:
Q  85 ttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaatacattttaaatacccatat 184  Q
    |||||| |||| ||| |||||||| |||| ||||||| ||| | ||| |   |||||| || || || ||||||||||||| || ||||||||||||| |    
T  33452162 ttcatttctttgtaacttcaatgtaaatgataattaagttttaatatgttgttattaattttataatttagaatataaaattcaatttaaatacccatct 33452063  T
Q  185 tttat 189  Q
    |||||    
T  33452062 tttat 33452058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 34975856 - 34975761
Alignment:
Q  94 ttttaatttcaatgtcaatggtaattaaat-ttgattatttcactattaacttaattatatagaatataaaataca-ttttaaatacccatatttt 187  Q
    |||||||||||||||||||| |||  |||  |||||| ||| | |||||| ||| | || |||||||||||||||| ||||||||||| |||||||    
T  34975856 ttttaatttcaatgtcaatgataagaaaaaattgattgttttattattaaattactgatttagaatataaaatacatttttaaataccgatatttt 34975761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 13444099 - 13444167
Alignment:
Q  97 taatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||||| |||||||||| ||||||||||| | ||||| |||||||| || || || |||| ||||||||    
T  13444099 taatttaaatgtcaatgataattaaatttaaatattttactattaattttatcatttagactataaaat 13444167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 5228202 - 5228251
Alignment:
Q  76 aaaaaatatttcattcctttttaatttcaatgtcaatggtaattaaattt 125  Q
    |||||||| ||||||  ||| ||||||||||||||||| |||||||||||    
T  5228202 aaaaaataattcatttatttataatttcaatgtcaatgataattaaattt 5228251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 3341263 - 3341176
Alignment:
Q  104 aatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat-acattttaaatacccatattttattg 191  Q
    |||||||||| ||||||||||| | |||||  ||||||| ||| | || |||| |||||||| | |||||||||| |||||||||||||    
T  3341263 aatgtcaatgataattaaatttaaatattttgctattaattta-taatttagagtataaaattaaattttaaataaccatattttattg 3341176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 46208433 - 46208501
Alignment:
Q  97 taatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||||| |||||||||| ||||||||||| | ||||| |||||||| || || || |||| ||||||||    
T  46208433 taatttaaatgtcaatgataattaaatttaaatattttactattaattttataatttagagtataaaat 46208501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 9720 - 9800
Alignment:
Q  85 ttcattcctttttaatttcaatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaat 165  Q
    |||||| |||| |||||| |||||||||| ||||||||||| | |||||  ||||||| || || || |||| ||||||||    
T  9720 ttcatttctttataatttaaatgtcaatgataattaaatttaaatattttgctattaattttataatttagagtataaaat 9800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 34636 - 34724
Alignment:
Q  104 aatgtcaatggtaattaaatttgattatttcactattaacttaattatatagaatataaaa-tacattttaaatacccatattttattg 191  Q
    |||||||||| ||||||||||| | |||||  ||||||| || || || |||| ||||||| ||  ||||||||| |||||||||||||    
T  34636 aatgtcaatgataattaaatttaaatattttgctattaattttataatttagagtataaaattaacttttaaataaccatattttattg 34724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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