View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4920_low_7 (Length: 346)
Name: NF4920_low_7
Description: NF4920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4920_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 8458001 - 8458334
Alignment:
| Q |
1 |
tttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacc |
100 |
Q |
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| T |
8458001 |
tttgacttcacaacgaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacc |
8458100 |
T |
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| Q |
101 |
cttttttgctagtcaataagttaatttctttgtacaaactttgatgcgcatgcagtctcatgtatatcaggtattgaattcattttttcatgttaccatt |
200 |
Q |
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| T |
8458101 |
cttttttgctagtcaataagttaatttctttgtacaaactttgatacgcatgcagtttcatgtatatcaggtattgaattcattttttcatgttaccatt |
8458200 |
T |
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| Q |
201 |
atttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagtcacatt |
300 |
Q |
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| T |
8458201 |
atttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagtcacatt |
8458300 |
T |
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| Q |
301 |
tgtagataatcatgatactggctcaacacaggtt |
334 |
Q |
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| T |
8458301 |
tgtagataatcatgatactggctcaactcaggtt |
8458334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 25802704 - 25802572
Alignment:
| Q |
169 |
aggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
267 |
Q |
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| T |
25802704 |
aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
25802605 |
T |
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| Q |
268 |
gattggatggtggccttcaagatcagtcacatt |
300 |
Q |
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| T |
25802604 |
gattggatggtggccttcaagatcagtcacatt |
25802572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 6827279 - 6827150
Alignment:
| Q |
164 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
262 |
Q |
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| T |
6827279 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacct |
6827180 |
T |
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| Q |
263 |
ggtgtgattggatggtggccttcaagatca |
292 |
Q |
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| T |
6827179 |
ggtgtgattggatggtggccttcaagatca |
6827150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6827339 - 6827278
Alignment:
| Q |
1 |
tttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
62 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6827339 |
tttgacttcacaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
6827278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 9822865 - 9822994
Alignment:
| Q |
164 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
262 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
9822865 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacct |
9822964 |
T |
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| Q |
263 |
ggtgtgattggatggtggccttcaagatca |
292 |
Q |
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| T |
9822965 |
ggtgtgattggatggtggccttcaagatca |
9822994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9822805 - 9822866
Alignment:
| Q |
1 |
tttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
62 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9822805 |
tttgacttcacaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
9822866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 18361263 - 18361145
Alignment:
| Q |
176 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgga |
274 |
Q |
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||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgaa |
18361164 |
T |
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| Q |
275 |
tggtggccttcaagatcag |
293 |
Q |
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| T |
18361163 |
tggtggccttcaagatcag |
18361145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 18361325 - 18361265
Alignment:
| Q |
3 |
tgacttcacaacaaagggaat--tctccaggtacccaacattttgtcctaagtatgttaaa |
61 |
Q |
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|||||||||| | |||||||| |||||||||||||| ||||||||| ||||||||||||| |
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| T |
18361325 |
tgacttcacagccaagggaatgatctccaggtacccagcattttgtcttaagtatgttaaa |
18361265 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 27964043 - 27963964
Alignment:
| Q |
213 |
ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
292 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27964043 |
ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
27963964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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