View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4921_low_2 (Length: 244)

Name: NF4921_low_2
Description: NF4921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4921_low_2
NF4921_low_2
[»] chr3 (13 HSPs)
chr3 (33-244)||(6523105-6523316)
chr3 (33-244)||(6556337-6556548)
chr3 (1-244)||(6945435-6945678)
chr3 (1-244)||(7586038-7586281)
chr3 (33-244)||(6841196-6841401)
chr3 (1-244)||(6528636-6528879)
chr3 (1-244)||(6942103-6942346)
chr3 (33-244)||(8452834-8453045)
chr3 (1-244)||(6733841-6734084)
chr3 (1-244)||(6781579-6781822)
chr3 (72-218)||(6730371-6730517)
chr3 (165-209)||(6450452-6450496)
chr3 (2-125)||(8588091-8588214)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-244)||(9385-9628)
[»] scaffold1643 (1 HSPs)
scaffold1643 (1-244)||(337-580)
[»] scaffold2053 (1 HSPs)
scaffold2053 (4-109)||(13-118)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 6523316 - 6523105
Alignment:
Q  33 aagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttgg 132  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||| | ||||||||||||||||||||||||| |||||    
T  6523316 aagaaaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatccaacttcaagtcttcaagaaagggaaaattgattaaattttgg 6523217  T
Q  133 tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatcta 232  Q
    ||||||||||||||||||| ||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  6523216 tccacggagaactccgtgttccgattttgccaaaggagtaactttttcaggctagtcggcaattcatttaccaaaattctatcacaactctgtatatcta 6523117  T
Q  233 actctatcatat 244  Q
    ||||||||||||    
T  6523116 actctatcatat 6523105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 6556548 - 6556337
Alignment:
Q  33 aagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttgg 132  Q
    |||| ||||||||||||||||||||||| | ||||| || ||| |||| ||  ||| ||| ||||||  ||||||||||||||||||||||||| |||||    
T  6556548 aagaaaattatagcaacgtaaatccaaagaaggacatttcacagagccactccaattcaactccaacgcttcaagaaagggaaaattgattaaattttgg 6556449  T
Q  133 tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatcta 232  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  6556448 tgcacggagaactccgtgtaccgatttcgccgaaggagtaactttttcaggctagtcggcaattcatttaccaaaattctatcacaattctgtatatcta 6556349  T
Q  233 actctatcatat 244  Q
    ||||||||||||    
T  6556348 actctatcatat 6556337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 6945435 - 6945678
Alignment:
Q  1 gaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaact 100  Q
    ||||| |||||||||||||| || || ||   |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||   |||||    
T  6945435 gaggaatgccatccttttattgaaagtctttcaagataattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatccaacctcaact 6945534  T
Q  101 tttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggccagtcggcaattcat 199  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||| |||||| |||| || |  ||| | |||| ||||||     |||||||||||||    
T  6945535 tttcaagaaagagaatattgattagattttggtccacggagaactcggtgtactgattatcac-aaagtaataaccttttcaaatttgtcggcaattcat 6945633  T
Q  200 ttaccaaaattctatcacaattctttatatctaactctatcatat 244  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||    
T  6945634 ttaccaaaattctatcacatctctgtatatctaactctatcatat 6945678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 7586038 - 7586281
Alignment:
Q  1 gaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaact 100  Q
    |||||||||||||||||||| || ||    | |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || | ||||     
T  7586038 gaggagtgccatccttttattgaaagatcacgaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatcaaacttcaaca 7586137  T
Q  101 tttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggccagtcggcaattcat 199  Q
     |||||||||| ||| |||||||| | ||||||||||||||||||| |||||| |||| || |  ||||| |||  ||||||     |||||||||||||    
T  7586138 cttcaagaaagagaatattgattagattttggtccacggagaactcggtgtactgattatcac-aaaggaataaacttttcaaatttgtcggcaattcat 7586236  T
Q  200 ttaccaaaattctatcacaattctttatatctaactctatcatat 244  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  7586237 ttaccaaaattctatcacatctctttatatctaactctatcatat 7586281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 6841401 - 6841196
Alignment:
Q  33 aagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttgg 132  Q
    ||||||||||||||||| |||||||||| | ||||| || ||| ||||      | |||||||||||| ||||||||||||||||||||||||| |||||    
T  6841401 aagagaattatagcaacttaaatccaaagaaggacatttcacagagcc------agccaattccaactcttcaagaaagggaaaattgattaaattttgg 6841308  T
Q  133 tccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatct 231  Q
    ||||||||||||||||||||  |||| || |  |||||||||| |||||| ||  ||||||||||||||||||||||||||||||||  ||| |||||||    
T  6841307 tccacggagaactccgtgtattgattatcac-aaaggagtaaccttttcaagctggtcggcaattcatttaccaaaattctatcacatctctgtatatct 6841209  T
Q  232 aactctatcatat 244  Q
    |||||||||||||    
T  6841208 aactctatcatat 6841196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 6528879 - 6528636
Alignment:
Q  1 gaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaact 100  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||| || ||| |||| ||  |||||||  ||||||    
T  6528879 gaggagtgccatccttttattgatagtctccaaagagaattatagcaacgtaaatccaaagaaggacatttcacagagccactccaatccaaccccaact 6528780  T
Q  101 tttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggccagtcggcaattcat 199  Q
     |||||||||||||||||| |||| | |||| | || ||| ||||| |||||| |||| || |  ||||| |||| ||||||  |  ||||| |||||||    
T  6528779 cttcaagaaagggaaaatttattacattttgctgcatggataactcggtgtactgattatcac-aaaggaataaccttttcaaactcgtcggaaattcat 6528681  T
Q  200 ttaccaaaattctatcacaattctttatatctaactctatcatat 244  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||    
T  6528680 ttaccaaaattctatcacatgtctgtatatctaactctatcatat 6528636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 6942103 - 6942346
Alignment:
Q  1 gaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaact 100  Q
    |||||||||||||||||||| || ||  |  |||| |||||||||||||||||||||||| | ||||| |  ||| ||||  ||||||||||  ||||||    
T  6942103 gaggagtgccatccttttattgaaagtgtagaaagggaattatagcaacgtaaatccaaagaaggacattccacaaagccagtaaaatccaacaccaact 6942202  T
Q  101 tttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatt 200  Q
     ||| ||||||||||||||||||| | |||||| || ||||||||| |||||| ||||      ||||| |||  |||||| ||  ||||||||||||||    
T  6942203 cttcgagaaagggaaaattgattacattttggtgcaaggagaactcggtgtactgattataacaaaggaataaacttttcaagctggtcggcaattcatt 6942302  T
Q  201 taccaaaattctatcacaattctttatatctaactctatcatat 244  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  6942303 taccaaaattctatcacatctctgtatatctaactctatcatat 6942346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 244
Target Start/End: Original strand, 8452834 - 8453045
Alignment:
Q  33 aagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttgg 132  Q
    |||||||||||||||||  |||||||||  |||||| |||| | ||||  | |||||||| ||||||  |||||||| || |   ||||  ||| | ||     
T  8452834 aagagaattatagcaacacaaatccaaagtgggacattttaaagagccattcaaatccaactccaacacttcaagaatggtactgttgacgaaaatctgc 8452933  T
Q  133 tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatcta 232  Q
    || |||||||||||||||||||| |||    ||| || ||||||||||| ||  ||||||||||||||||||||||||||||||||  ||||||||||||    
T  8452934 tctacggagaactccgtgtaccggttttcaagaatgaataactttttcaagctggtcggcaattcatttaccaaaattctatcacatctctttatatcta 8453033  T
Q  233 actctatcatat 244  Q
    | ||||| ||||    
T  8453034 aatctatgatat 8453045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 6733841 - 6734084
Alignment:
Q  1 gaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaact 100  Q
    |||||||||||||||||||| || ||    | |||||||||||| ||||  ||||||||| | ||||| |||||| | || ||  ||||||| | |||||    
T  6733841 gaggagtgccatccttttattgaaagatcaccaagagaattataacaacacaaatccaaagaaggacactttacaaaaccactccaatccaaattcaact 6733940  T
Q  101 tttcaagaaagggaaaattgattaaagtttgg-tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcat 199  Q
      ||||||| || | | |||| ||| |||||| ||||| |||||||| |||||| |||||     ||||| |||||||||||  |  || ||||||||||    
T  6733941 cgtcaagaatggtatagttgactaa-gtttggctccacagagaactcggtgtactgattttcagaaaggactaactttttcaaactggtaggcaattcat 6734039  T
Q  200 ttaccaaaattctatcacaattctttatatctaactctatcatat 244  Q
    |||||||||||||||||||  ||  ||||||||||||||||||||    
T  6734040 ttaccaaaattctatcacatctccgtatatctaactctatcatat 6734084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 6781822 - 6781579
Alignment:
Q  1 gaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaact 100  Q
    |||||||||||||||||||| || ||    | |||||||||||| ||||  ||||||||| | ||||| |||||| | || ||  ||||||| | |||||    
T  6781822 gaggagtgccatccttttattgaaagatcaccaagagaattataacaacacaaatccaaagaaggacactttacaaaaccactccaatccaaattcaact 6781723  T
Q  101 tttcaagaaagggaaaattgattaaagtttgg-tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcat 199  Q
      ||||||| || | | |||| ||| |||||| ||||| |||||||| |||||| |||||     ||||| |||||||||||  |  || ||||||||||    
T  6781722 cgtcaagaatggtatagttgactaa-gtttggctccacagagaactcggtgtactgattttcagaaaggactaactttttcaaactggtaggcaattcat 6781624  T
Q  200 ttaccaaaattctatcacaattctttatatctaactctatcatat 244  Q
    |||||||||||||||||||  ||  ||||||||||||||||||||    
T  6781623 ttaccaaaattctatcacatctccgtatatctaactctatcatat 6781579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 6730517 - 6730371
Alignment:
Q  72 tacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagt 171  Q
    |||| ||||||||||||| || ||||||| |||||||  || |   ||||  |||||||| |||| ||||||||   |||||||| ||  |  ||||| |    
T  6730517 tacaaagcctctaaaatcaaactccaactcttcaagattggtattgttgagaaaagtttgctccaaggagaacttaatgtaccgactttcccaaaggact 6730418  T
Q  172 aactttttcaggccagtcggcaattcatttaccaaaattctatcaca 218  Q
    |||||||||| || |||||||||||||||||||||||| || |||||    
T  6730417 aactttttcaagctagtcggcaattcatttaccaaaatgctttcaca 6730371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 6450496 - 6450452
Alignment:
Q  165 aaggagtaactttttcaggccagtcggcaattcatttaccaaaat 209  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||    
T  6450496 aaggactaactttttcaagctagtcggcaattcatttaccaaaat 6450452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 8588091 - 8588214
Alignment:
Q  2 aggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaactt 101  Q
    ||||| ||||||||||||| || ||  |||  |||||||||| |||||| | ||||||| ||||||| |  ||  ||||  |||||||||| | |||||     
T  8588091 aggagcgccatccttttattgaaagtttccggagagaattatggcaacgcagatccaaagagggacactccactaagccagtaaaatccaaatacaactc 8588190  T
Q  102 ttcaagaaagggaaaattgattaa 125  Q
    ||||||||| | ||||||||||||    
T  8588191 ttcaagaaatgtaaaattgattaa 8588214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9628 - 9385
Alignment:
Q  1 gaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaact 100  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||||||| |  ||| ||||  |||||||||||| ||||     
T  9628 gaggaatgccatccttgtattgatagtctccaaagagaattatagcaacgtagatccaaagagggacattccacaaagccagtaaaatccaattgcaacg 9529  T
Q  101 tttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatt 200  Q
     ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| ||  |||||||||  |||||| ||  ||||||||||||||    
T  9528 attcaagaaagggaaaattgattaaattttggtccacagagaactcagtgtaccgattttgccaaaggagtaaacttttcaagctggtcggcaattcatt 9429  T
Q  201 taccaaaattctatcacaattctttatatctaactctatcatat 244  Q
    ||||||||||||||||||| | | ||||||||||||||||||||    
T  9428 taccaaaattctatcacaactttgtatatctaactctatcatat 9385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 337 - 580
Alignment:
Q  1 gaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaact 100  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||| ||||||| |  ||| ||||  |||||||||||| |||||    
T  337 gaggagtgccatccttttattgatagtctccaaagagaattatagcaatgtagatccaaagagggacattccacaaagccagtaaaatccaattgcaact 436  T
Q  101 tttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggccagtcggcaattcat 199  Q
     ||||||||||||||||||||||||| |||||| |  ||||||||| |||||| |||| || |  ||||| |||| |||||| ||  |||| ||||||||    
T  437 cttcaagaaagggaaaattgattaaattttggtgcggggagaactcggtgtactgattatcac-aaaggaataaccttttcaagctggtcgacaattcat 535  T
Q  200 ttaccaaaattctatcacaattctttatatctaactctatcatat 244  Q
    |||||||||||||||||||  || |||||||||||||||||||||    
T  536 ttaccaaaattctatcacatctccttatatctaactctatcatat 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 118 - 13
Alignment:
Q  4 gagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaactttt 103  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||| ||    
T  118 gagtgccatccttttattgatagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaatccaacttcaactctt 19  T
Q  104 caagaa 109  Q
    ||||||    
T  18 caagaa 13  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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