View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4922-Insertion-2 (Length: 385)

Name: NF4922-Insertion-2
Description: NF4922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4922-Insertion-2
NF4922-Insertion-2
[»] chr4 (5 HSPs)
chr4 (8-133)||(40412908-40413031)
chr4 (254-377)||(40414163-40414287)
chr4 (153-184)||(40413051-40413082)
chr4 (254-306)||(18838761-18838813)
chr4 (254-282)||(33721702-33721730)
[»] chr7 (6 HSPs)
chr7 (255-314)||(2195806-2195865)
chr7 (256-309)||(12506714-12506767)
chr7 (254-309)||(37048581-37048636)
chr7 (254-309)||(46101299-46101354)
chr7 (254-309)||(46341503-46341558)
chr7 (256-309)||(12485282-12485335)
[»] chr5 (2 HSPs)
chr5 (256-309)||(6688793-6688846)
chr5 (256-309)||(3257298-3257351)
[»] chr3 (2 HSPs)
chr3 (254-309)||(32211876-32211931)
chr3 (256-309)||(43320220-43320273)
[»] chr8 (1 HSPs)
chr8 (259-309)||(31658859-31658909)
[»] chr6 (1 HSPs)
chr6 (256-323)||(1856747-1856810)
[»] scaffold0836 (1 HSPs)
scaffold0836 (256-309)||(3028-3081)
[»] scaffold0024 (1 HSPs)
scaffold0024 (254-309)||(154346-154401)
[»] chr2 (4 HSPs)
chr2 (254-309)||(3268804-3268859)
chr2 (254-309)||(3269363-3269418)
chr2 (254-309)||(3269922-3269977)
chr2 (256-304)||(28650283-28650331)
[»] chr1 (3 HSPs)
chr1 (254-309)||(17988370-17988425)
chr1 (254-309)||(39150267-39150322)
chr1 (258-294)||(34702223-34702259)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 40412908 - 40413031
Alignment:
Q  8 taagcgacctatttgtaaacactaaacaagatgagttatctattctctctcaatttagaatcnnnnnnnatgttaagacaatcgatgaactgtgttttta 107  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||  |||||||| ||       ||||||||||||||||| |||||||||||||    
T  40412908 taagcgacctacttgtaaacactaaacaagacgagttatctattctctc--aatttagactctttttttatgttaagacaatcgataaactgtgttttta 40413005  T
Q  108 taactactccctctttttcttattat 133  Q
    |||||||||| || ||||||||||||    
T  40413006 taactactccatccttttcttattat 40413031  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 40414163 - 40414287
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttatttataaatatgacaaa----nnnnnnnnngaaaattttcttata 349  Q
    |||||||||||||||||||||||||||||  ||||||||   ||||||||||||||||||||||||||  ||             |||||||||||||||    
T  40414163 ggtagaaaagtcttttaaacaataactacaccttaaaag---ttatattttcttatttataaatatgatcaatttttatttttttgaaaattttcttata 40414259  T
Q  350 tataggatcgagggagtatttctcttta 377  Q
    |||||||| |||||||||||||||||||    
T  40414260 tataggattgagggagtatttctcttta 40414287  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 184
Target Start/End: Original strand, 40413051 - 40413082
Alignment:
Q  153 catcaaaatcaatacacttgatttttacaaac 184  Q
    ||||||||||||||||||||||||||||||||    
T  40413051 catcaaaatcaatacacttgatttttacaaac 40413082  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 18838813 - 18838761
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttct 306  Q
    ||||||||||||||||||||||||| ||   |||||||||||| | |||||||    
T  18838813 ggtagaaaagtcttttaaacaataattataccttaaaagttatgacattttct 18838761  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 282
Target Start/End: Original strand, 33721702 - 33721730
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactac 282  Q
    |||||||||||||||||||||||||||||    
T  33721702 ggtagaaaagtcttttaaacaataactac 33721730  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 2195865 - 2195806
Alignment:
Q  255 gtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttatttata 314  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||| ||||    
T  2195865 gtagaaaagtcttttaaacaataactacaccttaaaagttatgatattttcttatatata 2195806  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 12506767 - 12506714
Alignment:
Q  256 tagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||| ||||||||||||  |||||||||| | ||||||||||||    
T  12506767 tagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttcttat 12506714  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 37048636 - 37048581
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    ||||||||||||||||||||||| |||||   ||||||||| | ||||||||||||    
T  37048636 ggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttat 37048581  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 46101299 - 46101354
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||| |  ||||||||| ||||||||||||| | ||||||||||    
T  46101299 ggtagaaaagtcttttgagtaataactacaacttaaaagttatgacattttcttat 46101354  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 46341558 - 46341503
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||| ||||||||||| ||||||||||  |||||||||| | ||||||||||||    
T  46341558 ggtagagaagtcttttaagcaataactacaccttaaaagttgtgatattttcttat 46341503  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 12485335 - 12485282
Alignment:
Q  256 tagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||| ||||||||||||  |||||||||| | ||||||| ||||    
T  12485335 tagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttattat 12485282  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 6688846 - 6688793
Alignment:
Q  256 tagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||||||||||||||  |||||||||| | ||||||||||||    
T  6688846 tagaaaagtcttttaaacaataactacaccttaaaagttgtgatattttcttat 6688793  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 3257298 - 3257351
Alignment:
Q  256 tagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    ||||||||||||||||||||||  |||  |||||||||| | ||||||||||||    
T  3257298 tagaaaagtcttttaaacaatagttacgccttaaaagttgtgatattttcttat 3257351  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 32211876 - 32211931
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||||||||||||||||  |||||||||| | | ||||||||||    
T  32211876 ggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttat 32211931  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 43320220 - 43320273
Alignment:
Q  256 tagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||||||||||| ||  |||||||||| | | ||||||||||    
T  43320220 tagaaaagtcttttaaacaataaccacaccttaaaagttgtgacattttcttat 43320273  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 31658909 - 31658859
Alignment:
Q  259 aaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    ||||||||||||||||||||||||  |||||||||| | ||||||||||||    
T  31658909 aaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttat 31658859  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 1856810 - 1856747
Alignment:
Q  256 tagaaaagtcttttaaacaataactactacttaaaagttattatattttcttatttataaatatgaca 323  Q
    |||||||||||||||||||||||||  |||||||||||| | |||||||    |||||||||||||||    
T  1856810 tagaaaagtcttttaaacaataactgatacttaaaagttgtgatatttt----tttataaatatgaca 1856747  T

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Target: scaffold0836 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 3081 - 3028
Alignment:
Q  256 tagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||||||||||||||  |||||||||| | | ||||||||||    
T  3081 tagaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttat 3028  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 154401 - 154346
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||| ||| ||||||||||||||||||||  |||||||||| | ||||||||||||    
T  154401 ggtaaaaaggtcttttaaacaataactacaccttaaaagttgtaatattttcttat 154346  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 3268859 - 3268804
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||||  ||||||||||  |||||||||| | ||||||||||||    
T  3268859 ggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttat 3268804  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 3269418 - 3269363
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||||  ||||||||||  |||||||||| | ||||||||||||    
T  3269418 ggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttat 3269363  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 3269977 - 3269922
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||||  ||||||||||  |||||||||| | ||||||||||||    
T  3269977 ggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttat 3269922  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 28650283 - 28650331
Alignment:
Q  256 tagaaaagtcttttaaacaataactactacttaaaagttattatatttt 304  Q
    ||||||||||||||||| |||||||||  |||||||||| ||| |||||    
T  28650283 tagaaaagtcttttaaataataactacaccttaaaagttgttacatttt 28650331  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 17988370 - 17988425
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||| ||||||||||||||||||||||||  |||||||||| | | ||||||||||    
T  17988370 ggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttat 17988425  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 39150267 - 39150322
Alignment:
Q  254 ggtagaaaagtcttttaaacaataactactacttaaaagttattatattttcttat 309  Q
    |||||||||||||||||| ||||||||||  |||||||||  | ||||||||||||    
T  39150267 ggtagaaaagtcttttaagcaataactacaccttaaaagtagtgatattttcttat 39150322  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 34702259 - 34702223
Alignment:
Q  258 gaaaagtcttttaaacaataactactacttaaaagtt 294  Q
    |||||||||||||| |||||||||| |||||||||||    
T  34702259 gaaaagtcttttaagcaataactacaacttaaaagtt 34702223  T

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