View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4922_low_1 (Length: 505)
Name: NF4922_low_1
Description: NF4922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4922_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 47364895 - 47365386
Alignment:
| Q |
1 |
taacagaaactgaagttagtctgtgtgatatttctaaatggccaagatgggttggtttagcatggtaaagaagctctttacacg--acacacattccact |
98 |
Q |
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| T |
47364895 |
taacagaaactgaagttagtctgtgtgatatttctaaatggccaagatgggttggtttagcatggtaaagaagctctttacacgggacatacattccact |
47364994 |
T |
|
| Q |
99 |
caagagaaggtaggtgtaatgtttatttgactaagtgtttattttggcaatgagtttggcaacattgcagtgtgtcatagtgattttgtcgaaagctaca |
198 |
Q |
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| T |
47364995 |
caagagaaggtaggtgtaatgtttatttgactaagtgtttattttggcaatgagtttggcaacattgcggtgtgtcgtagtgattttgtcgaaagctaca |
47365094 |
T |
|
| Q |
199 |
gtatcatgcttcaacaaaatcacagtgccaccgtgggttcgtctaacttactgcgattccaaacatgcactacttttttaagttaagattgtggtgttga |
298 |
Q |
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| T |
47365095 |
gtatcaagcttcaacaaaatcacagtgccaccgtgggttcgtctaacttactgcgattccaaacatgcactacttttttaagttaagattgtggtgttga |
47365194 |
T |
|
| Q |
299 |
cgagacaataacctgttttcagaaggagaaaag-aaagaagtgtgtatttgggaggctaaagaacaagagatttccttcgattgaagcaccaccaccatt |
397 |
Q |
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| T |
47365195 |
cgagacaataacctgttttcagaaggagaaaagaaaagaagtgtgtatttgggaggctaaagaacaagagatttccttcgattgaagcaccaccaccatt |
47365294 |
T |
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| Q |
398 |
aaaagaaacaagattatgtgaacctgaggctttaacagttgctattgcctcagctgcagcagctgaagctgcttttactgctgctcaggttg |
489 |
Q |
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| T |
47365295 |
aaaagaaacaagattatgtgaacctgaggctttaacagttgctattgcctcagctgcagcagctgaagctgcttttactgctgctcaggttg |
47365386 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 38692812 - 38692840
Alignment:
| Q |
206 |
gcttcaacaaaatcacagtgccaccgtgg |
234 |
Q |
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| T |
38692812 |
gcttcaacaaaatcacagtgccaccgtgg |
38692840 |
T |
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