View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4922_low_2 (Length: 441)
Name: NF4922_low_2
Description: NF4922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4922_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 34098189 - 34097813
Alignment:
| Q |
18 |
aattataatagtttgtaagctatacataaattaatctcattctaaggtgaggttagtgattctctttgacatataaccattctaatctagattacttttt |
117 |
Q |
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| T |
34098189 |
aattataatagtttgtaagctatacataaattaatctcattctaaggtgaggttagtgaatctctttgacatataaccattctaatctagattacttttt |
34098090 |
T |
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| Q |
118 |
tataaaataaaaaactgatagagagaga--agaaaagaattgtgatgtagtcctatgtttgaactgtgagtaagaaaagagaacatagggagagatatta |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098089 |
tataaaataaaaaactgatagagagagagaagaaaagaattgtgatgtagtcctatgtttgaactgtgagtaagaaaagagaacatagggagagatatta |
34097990 |
T |
|
| Q |
216 |
gggtgcagttttacctaaagaagagagattacagaaaagttaaaaggtaaaaaggtggtcataataagtagaacaaagagatatagcatgtttgccacag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097989 |
gggtgcagttttacctaaagaagagagattacagaaaagttaaaaggtaaaaaggtggtcataataagtagaacaaagagatatagcatgtttgccacag |
34097890 |
T |
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| Q |
316 |
gcagccactctgccatacaactcttactacatggaaaaagaaacactttttaactccttatattaacatgcatcttg |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097889 |
gcagccactctgccatacaactcttactacatggaaaaagaaacactttttaactccttatattaacatgcatcttg |
34097813 |
T |
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