View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4922_low_3 (Length: 274)
Name: NF4922_low_3
Description: NF4922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4922_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 6678019 - 6677786
Alignment:
| Q |
15 |
gaacagaaattggacgagcaagaaatgtttaagtagaaattggatgaacagtgaacaatgaacacgagnnnnnnntaaattaaaggataccaatctgaaa |
114 |
Q |
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| T |
6678019 |
gaacagaaattggatgagcaagaaatgtttaagtagaaattggatgaacagtgaaca-------cgagaaaaaaataaattaaaggataccaatctgaaa |
6677927 |
T |
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| Q |
115 |
tgcattattaaagtatcgagtattgattaaccataaaccactttactgttaacaatcctatgagccattcagcacgatacatcttttaatctattcaaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6677926 |
tgcattattaaagtatcgagtattgattaaccataaaccactttactgttaacaatcctatgagccattcagcacgatacatcttttaatctattcaaat |
6677827 |
T |
|
| Q |
215 |
ttcacttagaaaaaacacttaatcagcttaaacctcagctc |
255 |
Q |
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| T |
6677826 |
ttcacttagaaaaaacacttaatcagcttaaacctcagctc |
6677786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 3261478 - 3261430
Alignment:
| Q |
106 |
aatctgaaatgcattattaaagtatcgagtattgattaaccataaacca |
154 |
Q |
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| T |
3261478 |
aatctaaaatacatcattaaagtatcgagtattgattaaccatagacca |
3261430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 110 - 249
Target Start/End: Original strand, 36862692 - 36862831
Alignment:
| Q |
110 |
tgaaatgcattattaaagtatcgagtattgattaaccataaaccactttactgttaacaatcctatgagccattcagcacgatacatcttttaatctatt |
209 |
Q |
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| T |
36862692 |
tgaaatggattattaaagcattgagtattgattaaccatagaccattttactgttaacaatcctatgagccattcagcattatacatcttttaatcaatt |
36862791 |
T |
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| Q |
210 |
caaatttcacttagaaaaaacacttaatcagcttaaacct |
249 |
Q |
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| T |
36862792 |
taaatttcacttagaaaaaaaacttaaccagcttaaacct |
36862831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 36850995 - 36851151
Alignment:
| Q |
91 |
aaattaaaggataccaatctgaaatgcattattaaagtatcgagtattgattaaccataaaccactttactgttaacaatcctatgagccattcagcacg |
190 |
Q |
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| T |
36850995 |
aaattaaagaagactaatctgaaatgcattattaaagtattgagtattgattaaccatagaccattt-------aacaatcctaagagccattcagcatg |
36851087 |
T |
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| Q |
191 |
atacatcttttaatctattcaaatttcacttagaaaaaacacttaatcagcttaaacctcagctc |
255 |
Q |
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| T |
36851088 |
atacatcttttaatcaatttaaatttcacttagaaagaa-acttaaccagcttaaaccttagctc |
36851151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 36850940 - 36850984
Alignment:
| Q |
20 |
gaaattggacgagcaagaaatgtttaagtagaaattggatgaaca |
64 |
Q |
| |
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| T |
36850940 |
gaaattggatgatcaagaaatgtttaagtagaaattggatgaaca |
36850984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 36862615 - 36862661
Alignment:
| Q |
18 |
cagaaattggacgagcaagaaatgtttaagtagaaattggatgaaca |
64 |
Q |
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| T |
36862615 |
cagaaattagatgatcaagaaatgtttaagtagaaattggatgaaca |
36862661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 18133500 - 18133458
Alignment:
| Q |
112 |
aaatgcattattaaagtatcgagtattgattaaccataaacca |
154 |
Q |
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| T |
18133500 |
aaatgcatcattaaagtatcgagcattgattaaccatagacca |
18133458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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