View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4922_low_4 (Length: 250)
Name: NF4922_low_4
Description: NF4922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4922_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 40583676 - 40583429
Alignment:
| Q |
1 |
atttttaattaagaagatattatttactttttatatcaatggtaatatatatatgatttggaaatacttcatcttaatgagtatataaatatatttaatc |
100 |
Q |
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| T |
40583676 |
atttttaattaagaagatattatttactttttatatcaatggtaatatat----gatttggaaatacttcatcttaatgagtatataaatatatttaatc |
40583581 |
T |
|
| Q |
101 |
cttttctcaatgaaaatatgacaccataagtaaaactctgataccaaaaccgaccctgaactgaattgttcttcgtctgtcagatttccgattccgttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40583580 |
cttttctcaatgaaaatatgacaccataagtaaaactctgataccaaaaccgaccc-----tgaattgttcttcgtctgtcagatttccgattccgttac |
40583486 |
T |
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| Q |
201 |
aatccatccat----------gcagtgattgtcagattcaggtttttcttctctctc |
247 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40583485 |
aatccatccatgcagtgattggcagtgattgtcagattcaggtttttcttctctctc |
40583429 |
T |
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