View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4922_low_5 (Length: 218)

Name: NF4922_low_5
Description: NF4922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4922_low_5
NF4922_low_5
[»] chr2 (3 HSPs)
chr2 (4-209)||(40583780-40583985)
chr2 (48-205)||(20606320-20606471)
chr2 (53-191)||(38138589-38138727)
[»] chr5 (3 HSPs)
chr5 (34-205)||(40372002-40372174)
chr5 (164-218)||(24565594-24565648)
chr5 (164-218)||(24606630-24606684)
[»] chr4 (3 HSPs)
chr4 (44-201)||(45394587-45394745)
chr4 (106-198)||(2460888-2460981)
chr4 (51-135)||(5227894-5227978)
[»] chr7 (2 HSPs)
chr7 (43-205)||(43660237-43660393)
chr7 (34-191)||(30580689-30580840)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 40583985 - 40583780
Alignment:
Q  4 cgcttaaagcattatgttatgcaaaaattttggcagcagccatcttgtgcagaatttttggttagaaaggaaccatacggggaagagaaaaggaaagcga 103  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  40583985 cgcttaaagcattatgttatgcaaaatttttggccgcagccatcttgtgcagaatttttggttagaaaggaatcatatggggaagagaaaaggaaagcga 40583886  T
Q  104 cgtgattgtgtgtagcaacgtaaagttgttctatttttatttttcaacaaaatctaacggttaattaaatctaatgttattttattcacggtccatcggt 203  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  40583885 cgtgattgtatgtagcaacgtaaagttgttctatttttatttttcaacaaaatctaaccgttaattaaatctaatgttattttattcacggtccatcgat 40583786  T
Q  204 gaagga 209  Q
    ||||||    
T  40583785 gaagga 40583780  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 205
Target Start/End: Complemental strand, 20606471 - 20606320
Alignment:
Q  48 ttgtgcagaatttttggttagaaaggaaccatacggggaagagaaaaggaaagcgacgtgattgtgtgtagcaacgtaaagttgttct-atttttatttt 146  Q
    |||||||||||||| ||||||||||||||       ||||||||||||||||  || || |||||||||||||| ||||||||||||| ||||||  |||    
T  20606471 ttgtgcagaatttt-ggttagaaaggaact------ggaagagaaaaggaaaaggatgtaattgtgtgtagcaatgtaaagttgttctcattttttattt 20606379  T
Q  147 tcaacaaaatctaacggttaattaaatctaatgttattttattcacggtccatcggtga 205  Q
    | |||||||||||||  |||||||||||||| |||||||||||||| ||||||||||||    
T  20606378 ttaacaaaatctaaccattaattaaatctaacgttattttattcacagtccatcggtga 20606320  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 38138589 - 38138727
Alignment:
Q  53 cagaatttttggttagaaaggaaccatacggggaagagaaaaggaaagcgacgtgattgtgtgtagcaacgtaaagttg-ttctatttttatttttcaac 151  Q
    ||||||||||||||||| ||||| |  | ||||| |||||| |||||| ||| ||||||||||||| ||  |||||||| || ||||||| ||||  ||     
T  38138589 cagaatttttggttagagaggaatccgatggggaggagaaacggaaagggacatgattgtgtgtagaaatctaaagttgtttttatttttgtttt--aag 38138686  T
Q  152 aaaatct-aacggttaattaaatctaatgttattttattca 191  Q
     |||||| |||  ||||||||||| |||| |||||||||||    
T  38138687 taaatctgaaccattaattaaatcaaatggtattttattca 38138727  T

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Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 40372002 - 40372174
Alignment:
Q  34 tggcagcagccatcttgtgcagaatttttggttagaaaggaaccatacggggaagagaaaaggaaagcgacgtgattgtgtgtagcaacgtaaagttgtt 133  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||  |||||||| |||||||||| ||||| |||||    
T  40372002 tggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattttgtgtagcaaggtaaacttgtt 40372101  T
Q  134 ct-atttttatttttcaacaaaatctaacggttaattaaatctaatgttattttattcacggtccatcggtga 205  Q
    || ||||||| |||||||||||||||||  ||||||||||||||| |||||||||||||  ||||| ||||||    
T  40372102 ctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtga 40372174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 24565648 - 24565594
Alignment:
Q  164 ttaattaaatctaatgttattttattcacggtccatcggtgaaggattcaattga 218  Q
    |||||||||||||||| |||||| |||| |||||| |||||| ||||| ||||||    
T  24565648 ttaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattga 24565594  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 24606684 - 24606630
Alignment:
Q  164 ttaattaaatctaatgttattttattcacggtccatcggtgaaggattcaattga 218  Q
    |||||||||||||||| |||||| |||| |||||| |||||| ||||| ||||||    
T  24606684 ttaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattga 24606630  T

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Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 45394587 - 45394745
Alignment:
Q  44 catcttgtgcagaatttttggttagaaaggaaccatacggggaagagaaaaggaaagcgacgtgattgtgtgtagcaacgtaaagttgttct-attttta 142  Q
    |||||||||||||| |||||||||||||||||||  | |||||||||||||||||||  ||||||||||||||||||| ||||| ||||||| |||||||    
T  45394587 catcttgtgcagaagttttggttagaaaggaaccggatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttctcattttta 45394686  T
Q  143 tttttcaacaaaatctaacggttaattaaatctaatgttattttattcacggtccatcg 201  Q
     |||||||||||||||||  ||||||||||||||| |||||||||||||  ||||||||    
T  45394687 attttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccatcg 45394745  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 2460981 - 2460888
Alignment:
Q  106 tgattgtgtgtagcaacgtaaagttgttct-atttttatttttcaacaaaatctaacggttaattaaatctaatgttattttattcacggtcca 198  Q
    ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||   |||||||| |||| ||| ||||||||| ||||||    
T  2460981 tgattgtgtgtagcaatataaagttgttctcatttttaattttcaacaaaatctaaccactaattaaacctaacgttgttttattcatggtcca 2460888  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 5227978 - 5227894
Alignment:
Q  51 tgcagaatttttggttagaaaggaaccatacggggaagagaaaaggaaagcgacgtgattgtgtgtagcaacgtaaagttgttct 135  Q
    ||||||||||||||||||| |||||    | ||||| |||||| |||||| ||| ||||||||||||| ||  |||| |||||||    
T  5227978 tgcagaatttttggttagagaggaatgtgatggggacgagaaacggaaagggacatgattgtgtgtagaaatctaaaattgttct 5227894  T

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Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 43660237 - 43660393
Alignment:
Q  43 ccatcttgtgcagaatttttggttagaaaggaaccatacggggaagagaaaaggaaagcgacgtgattgtgtgtagcaacgtaaagttgttctattttta 142  Q
    ||||||||||||||||||| ||||||||||||||      |||||||||||||||||  ||||| |||||||||| ||| |||||||||||||||||||     
T  43660237 ccatcttgtgcagaatttt-ggttagaaaggaact-----gggaagagaaaaggaaaaggacgtaattgtgtgtaccaatgtaaagttgttctatttttt 43660330  T
Q  143 tttttcaacaaaatctaacggttaattaaatctaatgttattttattcacggtccatcggtga 205  Q
     |||| |||||||||||||  |||||||||||||| ||||||||||||| |||||| ||||||    
T  43660331 atttttaacaaaatctaaccattaattaaatctaacgttattttattcatggtccaccggtga 43660393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 30580840 - 30580689
Alignment:
Q  34 tggcagcagccatcttgtgcagaatttttggttagaaaggaaccatacggggaagagaaaaggaaagcgacgtgattgtgtgtagcaacgtaaagttgtt 133  Q
    |||||||| ||||||||||||||||||| ||||||||||||||       ||||||||||||||||  ||||| ||||||||||||||  ||||||||||    
T  30580840 tggcagcaaccatcttgtgcagaatttt-ggttagaaaggaact------ggaagagaaaaggaaaaggacgtaattgtgtgtagcaatataaagttgtt 30580748  T
Q  134 ct-atttttatttttcaacaaaatctaacggttaattaaatctaatgttattttattca 191  Q
    || ||||||  |||| |||||||||||||  |||||||||||||| |||||||||||||    
T  30580747 ctcattttttatttttaacaaaatctaaccattaattaaatctaacgttattttattca 30580689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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