View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4923-Insertion-1 (Length: 1150)

Name: NF4923-Insertion-1
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4923-Insertion-1
NF4923-Insertion-1
[»] chr2 (6 HSPs)
chr2 (8-1095)||(18803439-18804527)
chr2 (762-828)||(42157211-42157277)
chr2 (762-828)||(42167706-42167772)
chr2 (942-1003)||(42167897-42167958)
chr2 (942-1003)||(42289974-42290035)
chr2 (763-828)||(42290147-42290212)
[»] chr4 (16 HSPs)
chr4 (608-1027)||(4624724-4625136)
chr4 (708-1024)||(4600686-4600985)
chr4 (920-1023)||(25039365-25039469)
chr4 (920-1018)||(25018254-25018353)
chr4 (694-832)||(25018016-25018154)
chr4 (739-832)||(25039175-25039268)
chr4 (372-476)||(4600147-4600251)
chr4 (372-476)||(4624395-4624499)
chr4 (616-698)||(25039059-25039141)
chr4 (559-716)||(4600348-4600505)
chr4 (565-707)||(25017855-25017999)
chr4 (942-1004)||(25047277-25047339)
chr4 (76-192)||(25038412-25038528)
chr4 (386-433)||(25017642-25017689)
chr4 (31-115)||(4599819-4599901)
chr4 (77-110)||(25017312-25017345)
[»] chr5 (1 HSPs)
chr5 (946-1003)||(30360258-30360315)
[»] chr6 (2 HSPs)
chr6 (763-829)||(29460418-29460484)
chr6 (922-1003)||(29405630-29405711)


Alignment Details
Target: chr2 (Bit Score: 854; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 854; E-Value: 0
Query Start/End: Original strand, 8 - 1095
Target Start/End: Complemental strand, 18804527 - 18803439
Alignment:
Q  8 atttagaggctttaaaacgtgcttcgtagaaaaggtaagaaaaatatagtcattaccatccgagcaataaatcaagggcacgttcggcagcttgatgatc 107  Q
    ||||||||||||||||||||| || |||   |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18804527 atttagaggctttaaaacgtgtttggta---aaggtaagaagaatatagtcattaccatccaagcaataaatcaagggcacgttcggcagcttgatgatc 18804431  T
Q  108 taacgggttatccgattgcggcaaaaaccatgtacagtttagtgtgatgcctatgatacccttttgagaagcctgcttccattaacatttctattagtaa 207  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18804430 taacgggttatctgattgcggcaaaaaccaggtacagtttaatgtgatgcctattatacccttttgagaagcctgcttccattaacatttctattagtaa 18804331  T
Q  208 taaataaattgtaacattataaaggnnnnnnngaagattggggttaatggttcttcaattttgcacctgataannnnnnnnatacaatttgacagcagct 307  Q
    |||||||||||||||||||||||||        ||||||  ||||||||||||||||||  ||||||||||||        |||||||||||||||||||    
T  18804330 taaataaattgtaacattataaaggaaaaaaaaaagattaaggttaatggttcttcaatggtgcacctgataatttgttttatacaatttgacagcagct 18804231  T
Q  308 gcatgagcgagaagtaggttttgtgcggccacgaggggatattttgtactcgtagagtaaaagtatggctcattaagagtaatccaatgctttactctgt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18804230 gcatgagcgagaagtaggttttgtgcggccacgaggggatattttgtactcgtagagtaaaagtatggctcattaagagtaatccaatgatttactctgt 18804131  T
Q  408 ctccaaattcctcgaagcatacctcgacaaagctcttgaaatcatctctgcatgtagaaattaaacaattaaatttatgtcagtaggaggggttggctac 507  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  18804130 ctccaaattcctcgaagcatacctccacaaagctcttgaaatcatctctgcatgtagaaattaaacaattaaacttatgtcagtaggacgggttggctac 18804031  T
Q  508 gtggatcaaacaatatcataaattttgtattgcttgattgaaaaatttcgccacaatacttacacaatataggggctgtggaagccaccatactcgtcaa 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  18804030 gtggatcaaacaatatcataaattttgtattgcttgattgaaaaatttcgccgcaatacttacacaatataggggctgtggaagccaccatactcatcaa 18803931  T
Q  608 gtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattatgaacatcat 707  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18803930 gtaaggtctggggaaaatccgaatgaaaaagggtcacatatggtactagacctggatcaataactcagtcaatttatattactatgattatgaacatcat 18803831  T
Q  708 gaatatgatatactaataaagtagggatcattatgcattaccattaccaagtagttcattgatcaggttgttgtaaaatctgattccttctttgttttta 807  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18803830 gaatattatatactaataaagtagggattattatgcattaccattatcaagtagctcattgatcaggttgttgtaaaatctgattccttctttgttttta 18803731  T
Q  808 ccgccactaagttttccttctgcatgtttttactttgttagagttgttattagtatatggaagattcaactagttgaagctctataatgtggtaactaaa 907  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||| ||||||    
T  18803730 ccgccactaagttttccttctgcatgtttttactttgttagagttgttattagtatatggaagattcaactgattgaagctctttaatgtggtcactaaa 18803631  T
Q  908 ttgaacactttctattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatg- 1006  Q
    || |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18803630 ttaaactttttctattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatga 18803531  T
Q  1007 agatgtaaaaatggttaacaccctgtactagaacaaaaac-tgc-aacaaatattagctagaga-tcataaa-taaaatctttattagatgct 1095  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  18803530 agatgtaaaaatggttaacaccctgtactag-acaaaaacttgcaaacaaatattagctagagattcataaattaaaatctttattggatgct 18803439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 762 - 828
Target Start/End: Original strand, 42157211 - 42157277
Alignment:
Q  762 ttcattgatcaggttgttgtaaaatctgattccttctttgtttttaccgccactaagttttccttct 828  Q
    ||||||||| |||||||||||| || ||| |||||||| |||| |||| ||| ||||||||||||||    
T  42157211 ttcattgatgaggttgttgtaatatttgactccttcttggtttatacctccattaagttttccttct 42157277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 762 - 828
Target Start/End: Original strand, 42167706 - 42167772
Alignment:
Q  762 ttcattgatcaggttgttgtaaaatctgattccttctttgtttttaccgccactaagttttccttct 828  Q
    ||||||||| |||||||||||| || |||||||||||| |||| |||| ||  |||| |||||||||    
T  42167706 ttcattgatgaggttgttgtaatatttgattccttcttggtttatacctcccttaagctttccttct 42167772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 942 - 1003
Target Start/End: Original strand, 42167897 - 42167958
Alignment:
Q  942 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 1003  Q
    ||||||||| ||||||||||| ||||||  |||||||| | |||||||  ||||||||||||    
T  42167897 ccaagagattgagaatctgtaagcatctaaattcatattcctcatgatgccaacatcttcct 42167958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 942 - 1003
Target Start/End: Complemental strand, 42290035 - 42289974
Alignment:
Q  942 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 1003  Q
    ||||||||| ||||||||||| |||||   |||||||| |||||||||  ||||||||||||    
T  42290035 ccaagagatcgagaatctgtaggcatccaaattcatattcttcatgatgccaacatcttcct 42289974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 763 - 828
Target Start/End: Complemental strand, 42290212 - 42290147
Alignment:
Q  763 tcattgatcaggttgttgtaaaatctgattccttctttgtttttaccgccactaagttttccttct 828  Q
    |||||||| |||||||||||| || ||| |||||||| |||| |||| ||| ||| ||||||||||    
T  42290212 tcattgatgaggttgttgtaatatttgactccttcttggtttatacctccattaatttttccttct 42290147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 3e-91; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 608 - 1027
Target Start/End: Original strand, 4624724 - 4625136
Alignment:
Q  608 gtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattatgaacatcat 707  Q
    |||||| |||||||| |||| |||||||||| ||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||| ||||||||||||    
T  4624724 gtaaggcctggggaagatcccaatgaaaaagggtcacatatggtatttgacctggatcaataattccatcaatttatattattatgagtatgaacatcat 4624823  T
Q  708 gaatatgatatactaataaagtagggatcattatgcattaccattaccaagtagttcattgatcaggttgttgtaaaatctgattccttctttgttttta 807  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||| ||||||| |||| ||||||||| ||||||||| |||||||| ||| ||||  |    
T  4624824 gaatatgatatactaataaagtatggaatattatgcattaccattagcaagtagctcatagatcaggttcttgtaaaatatgattcctgcttggtttaca 4624923  T
Q  808 ccgccactaagttttccttctgcatgtttttactttgttagagttgttattagtatatggaagattcaactagttgaagctctataatgtggtaactaaa 907  Q
    ||| |||| | ||||||  ||||||        |||||||||||||||| | |||||||||| || |||||||||||| |||  |||||  ||||| |||    
T  4624924 ccgtcacttatttttccagctgcat-------atttgttagagttgttagt-gtatatggaaaatacaactagttgaaactcattaatgatgtaaccaaa 4625015  T
Q  908 ttgaacactttctattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct-atg 1006  Q
    || |||| |||||||||||||| | |||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||  |||||||||||  |     
T  4625016 ttaaacattttctattacttggaactatccttggccaagatatggagaatctgtatgcatctgtattcatattcttcatgatttgaacatcttcctgtta 4625115  T
Q  1007 agatgtaaaaatggttaacac 1027  Q
    |||||||| ||||||||||||    
T  4625116 agatgtaacaatggttaacac 4625136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 708 - 1024
Target Start/End: Original strand, 4600686 - 4600985
Alignment:
Q  708 gaatatgatatactaataaagtagggatcattatgcattaccattaccaagtagttcattgatcaggttgttgtaaaatctgattccttctttgttttta 807  Q
    ||||||||| |||||||||| || | || |||||| |||||||||| ||||||| ||||  ||||| ||||||||||||||||||||||||| |||| ||    
T  4600686 gaatatgatgtactaataaattatgtattattatgtattaccattagcaagtagctcatcaatcagattgttgtaaaatctgattccttcttggtttata 4600785  T
Q  808 ccgccactaagttttccttctgcatgtttttactttgttagagttgttattagtatatggaagattcaactagttgaagctctataatgtggtaactaaa 907  Q
    |||||||| |||||||| ||||||| |||       ||||||||||| | | ||||||||||||| ||       ||| ||||   ||||   |||||||    
T  4600786 ccgccacttagttttccatctgcatattt-------gttagagttgtcagt-gtatatggaagatgca-------gaaactcttcgatgt---aactaaa 4600867  T
Q  908 ttgaacactttctattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttccta-tg 1006  Q
    || |||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  4600868 ttaaacattttctattacttggcaatatccttggccaagatatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcctatta 4600967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 920 - 1023
Target Start/End: Original strand, 25039365 - 25039469
Alignment:
Q  920 tattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttccta-tgagatgtaaaaat 1018  Q
    |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  25039365 tattacttggcaatattcttggccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcctcctattaagatgtaaaaat 25039464  T
Q  1019 ggtta 1023  Q
    |||||    
T  25039465 ggtta 25039469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 920 - 1018
Target Start/End: Original strand, 25018254 - 25018353
Alignment:
Q  920 tattacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttccta-tgagatgtaaaaat 1018  Q
    |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  25018254 tattacttggcaatattcttggccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcgacatcttcctattaagatgtaaaaat 25018353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 694 - 832
Target Start/End: Original strand, 25018016 - 25018154
Alignment:
Q  694 attatgaacatcatgaatatgatatactaataaagtagggatcattatgcattaccattaccaagtagttcattgatcaggttgttgtaaaatctgattc 793  Q
    ||||||||| ||||||||||||||||||  | ||| | | || ||||||||||||||||| ||||||| ||||||||||| ||||||||| || ||||||    
T  25018016 attatgaacttcatgaatatgatatacttgtgaagcatgtattattatgcattaccattatcaagtagctcattgatcagattgttgtaatatttgattc 25018115  T
Q  794 cttctttgtttttaccgccactaagttttccttctgcat 832  Q
    ||||||  ||| ||||  |||| | ||||||||||||||    
T  25018116 cttcttgatttatacccgcacttacttttccttctgcat 25018154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 739 - 832
Target Start/End: Original strand, 25039175 - 25039268
Alignment:
Q  739 tatgcattaccattaccaagtagttcattgatcaggttgttgtaaaatctgattccttctttgtttttaccgccactaagttttccttctgcat 832  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| ||||  |||| | ||||||||||||||    
T  25039175 tatgcattaccattatcaagtagttcattgatcaggttgttgtaatatttgattccttcttggtttataccttcacttacttttccttctgcat 25039268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 372 - 476
Target Start/End: Original strand, 4600147 - 4600251
Alignment:
Q  372 atggctcattaagagtaatccaatgctttactctgtctccaaattcctcgaagcatacctcgacaaagctcttgaaatcatctctgcatgtagaaattaa 471  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||| | |||||||| ||| ||||||  ||| ||||||| |||||| |||||||||||    
T  4600147 atggctcattaaaagtaacccaatgctttactctatctccaaattcttggaagcatatctccacaaagtccttaaaatcatttctgcacgtagaaattaa 4600246  T
Q  472 acaat 476  Q
    |||||    
T  4600247 acaat 4600251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 372 - 476
Target Start/End: Original strand, 4624395 - 4624499
Alignment:
Q  372 atggctcattaagagtaatccaatgctttactctgtctccaaattcctcgaagcatacctcgacaaagctcttgaaatcatctctgcatgtagaaattaa 471  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||| ||||||||  || ||||||  ||| ||||| | ||||||| ||||||||||    
T  4624395 atggctcattaaaagtaacccaatgctttacactgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttctgcatatagaaattaa 4624494  T
Q  472 acaat 476  Q
    |||||    
T  4624495 acaat 4624499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 616 - 698
Target Start/End: Original strand, 25039059 - 25039141
Alignment:
Q  616 tggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattat 698  Q
    ||||||| |||| |||| ||||| |||||| ||||||| |||||| ||||||||| ||  |||||||||||||||||||||||    
T  25039059 tggggaagatcccaatggaaaagggtcacaaatggtaccagacctggatcaataagtccatcaatttatattactatgattat 25039141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 559 - 716
Target Start/End: Original strand, 4600348 - 4600505
Alignment:
Q  559 cacaatacttacacaatataggggctgtggaagccaccatactcgtcaagtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagac 658  Q
    ||||||||||||| |||||| ||||||  ||| ||  | ||||| ||  ||||| | | ||| | |||| |||||||||| || |||||||||| | |||    
T  4600348 cacaatacttacataatatatgggctgcagaatccttcgtactcctcttgtaagatgttgggcagatcccaatgaaaaagggttacatatggtatttgac 4600447  T
Q  659 ctagatcaataactcagtcaatttatattactatgattatgaacatcatgaatatgat 716  Q
    || ||||||||| ||  ||||||||||||| |||||  |||||||||| |||||||||    
T  4600448 ctggatcaataattccatcaatttatattattatgagcatgaacatcacgaatatgat 4600505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 565 - 707
Target Start/End: Original strand, 25017855 - 25017999
Alignment:
Q  565 acttacacaatataggggctgtggaagccaccatactcgtcaagtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagat 664  Q
    ||||||| |||||| |||||   ||||||||  ||||||||  ||| ||  ||||||| |||| | |||||||| |||||| ||||||| ||||||| ||    
T  25017855 acttacataatataagggcttaagaagccactgtactcgtcttgtagggcttggggaagatcccagtgaaaaagggtcacaaatggtaccagacctatat 25017954  T
Q  665 --caataactcagtcaatttatattactatgattatgaacatcat 707  Q
      |||||| ||  ||||||||||||||||| ||||||||||||||    
T  25017955 accaataattccatcaatttatattactattattatgaacatcat 25017999  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 942 - 1004
Target Start/End: Original strand, 25047277 - 25047339
Alignment:
Q  942 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttccta 1004  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||| |||||||||||||    
T  25047277 ccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttccta 25047339  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 25038412 - 25038528
Alignment:
Q  76 aaatcaagggcacgttcggcagcttgatgatctaacgggttatccgattgcggcaaaaaccatgtacagtttagtgtgatgcctatgatacccttttgag 175  Q
    |||||||| |||||||||| ||||||||||||||||| || ||  ||   ||||||||||||   ||| ||||  |||||||||||   ||| |||||||    
T  25038412 aaatcaagagcacgttcggaagcttgatgatctaacgtgtcatttgagaacggcaaaaaccagtgacaatttaaggtgatgcctattgaaccattttgag 25038511  T
Q  176 aagcctgcttccattaa 192  Q
    ||||||| | |||||||    
T  25038512 aagcctgatgccattaa 25038528  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 25017642 - 25017689
Alignment:
Q  386 gtaatccaatgctttactctgtctccaaattcctcgaagcatacctcg 433  Q
    |||||||||||||| |||| |||||||||||||| |||||||| ||||    
T  25017642 gtaatccaatgcttcactcggtctccaaattccttgaagcatagctcg 25017689  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 4599819 - 4599901
Alignment:
Q  31 tcgtagaaaaggtaagaaaaatatagtcattaccatccgagcaataaatcaagggcacgttcggcagcttgatgatctaacgggt 115  Q
    ||||||||||||||| |||| ||  ||||||||||||| | ||  ||||||||||| |||||||  ||||| |||||||| ||||    
T  4599819 tcgtagaaaaggtaaaaaaagta--gtcattaccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggt 4599901  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 25017312 - 25017345
Alignment:
Q  77 aatcaagggcacgttcggcagcttgatgatctaa 110  Q
    ||||||| ||||||||||||||||||||||||||    
T  25017312 aatcaagagcacgttcggcagcttgatgatctaa 25017345  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 946 - 1003
Target Start/End: Complemental strand, 30360315 - 30360258
Alignment:
Q  946 gagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 1003  Q
    |||||||| ||||| |||||||||  ||||||||||||||||||  ||||||||||||    
T  30360315 gagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 30360258  T

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Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 763 - 829
Target Start/End: Original strand, 29460418 - 29460484
Alignment:
Q  763 tcattgatcaggttgttgtaaaatctgattccttctttgtttttaccgccactaagttttccttctg 829  Q
    |||||||| |||||||||||| |  |||||||||| |||||| |||| |||| ||| ||||||||||    
T  29460418 tcattgatgaggttgttgtaataattgattccttccttgtttatacctccaccaagctttccttctg 29460484  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 922 - 1003
Target Start/End: Complemental strand, 29405711 - 29405630
Alignment:
Q  922 ttacttggcaatatcctcgcccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttcct 1003  Q
    |||||||||||||| || | ||||||||| ||||||||||| |||||  | ||||| | |||||||||  | ||||||||||    
T  29405711 ttacttggcaatattcttgaccaagagattgagaatctgtaagcatccatgttcatgtccttcatgatctcgacatcttcct 29405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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