View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4923-Insertion-3 (Length: 501)

Name: NF4923-Insertion-3
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4923-Insertion-3
NF4923-Insertion-3
[»] chr8 (2 HSPs)
chr8 (13-501)||(37178715-37179198)
chr8 (43-75)||(37203759-37203791)


Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 501
Target Start/End: Original strand, 37178715 - 37179198
Alignment:
Q  13 aacattcacaatgatgaaaattaatatgtttttggatattgaggactaagcatatacattgatgcaaatgttttgcatttttatgaacaatccaaaaaat 112  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  37178715 aacatttacaatgatgaaaattaatatgtttatggatattgaggactaagcatatacattgatgcaaatgttttgcatttttatgaacaatccaaaattt 37178814  T
Q  113 tct-attgaaagctaatgtattatgtatgacccttttaaacaatgttgcaagggtcaatctcattccatatcatggttactccatttcttcctttttaca 211  Q
    | | ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37178815 ttttattgaaagctaatgtac-------gacccttttaaacaatgttgcaagggtcaatctcattccatatcatggttactccatttcttcctttttaca 37178907  T
Q  212 tgccannnnnnn-gtataaaatgtagtctttatttaaacgcctttttgaaagtttaatgcaacattaactattttacaatagtgaaatgaatatgaatag 310  Q
    |||||        ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37178908 tgccattttttttgtataaattgtgttctttatttaaacgcctttttgaaagtttaatgcaacattaactattttacaaaagtgaaatgaatatgaatag 37179007  T
Q  311 ttaaatgtataacaaaagtaaatcctgatttattatgttgtgagagcttagcccatctactaggcagcacaatcacgcaaccttgtcggaaccttgctta 410  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179008 ttaaatgtataacaaaagtaaatcccgatttattatgttgtgagagcttagcccatctactaggcagcacaatcacgcaaccttgtcggaaccttgctta 37179107  T
Q  411 gcacttctatcaattcaaaagaatatcatcagctaaaataaatcctataaactagtaatggaatgagataacaataatgtaattgtgtctg 501  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37179108 gcacttctatcaatccaaaagaatattatcagctaaaataaatcctataaactagtaatggaatgagacaacaataatgtaattgtgtctg 37179198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 37203759 - 37203791
Alignment:
Q  43 tttggatattgaggactaagcatatacattgat 75  Q
    ||||||||||||| |||||||||||||||||||    
T  37203759 tttggatattgagtactaagcatatacattgat 37203791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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