View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4923-Insertion-4 (Length: 441)

Name: NF4923-Insertion-4
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4923-Insertion-4
NF4923-Insertion-4
[»] chr4 (10 HSPs)
chr4 (7-441)||(55264647-55265084)
chr4 (326-432)||(43336074-43336181)
chr4 (325-432)||(16291815-16291924)
chr4 (19-94)||(44137366-44137441)
chr4 (245-329)||(4341967-4342052)
chr4 (243-318)||(789781-789856)
chr4 (250-306)||(12141786-12141842)
chr4 (20-95)||(13302113-13302188)
chr4 (244-321)||(43698761-43698836)
chr4 (322-355)||(12101339-12101372)
[»] chr7 (7 HSPs)
chr7 (322-432)||(47113173-47113285)
chr7 (245-327)||(40773404-40773486)
chr7 (325-432)||(22589261-22589369)
chr7 (325-422)||(21801304-21801402)
chr7 (325-432)||(10877134-10877243)
chr7 (325-354)||(39296595-39296624)
chr7 (325-361)||(31494004-31494040)
[»] chr3 (7 HSPs)
chr3 (325-432)||(34296481-34296590)
chr3 (14-90)||(39840914-39840990)
chr3 (9-90)||(48338569-48338650)
chr3 (322-432)||(36033645-36033757)
chr3 (14-71)||(39840659-39840716)
chr3 (383-431)||(3821003-3821051)
chr3 (7-83)||(55446934-55447010)
[»] chr5 (7 HSPs)
chr5 (259-312)||(15925889-15925942)
chr5 (325-432)||(24025113-24025222)
chr5 (25-96)||(12640244-12640315)
chr5 (44-90)||(9637804-9637850)
chr5 (321-432)||(21376049-21376162)
chr5 (14-90)||(8840042-8840118)
chr5 (243-319)||(30316519-30316595)
[»] chr1 (11 HSPs)
chr1 (326-432)||(28552451-28552559)
chr1 (245-328)||(23802592-23802675)
chr1 (326-432)||(6285310-6285418)
chr1 (327-425)||(14366399-14366499)
chr1 (243-326)||(4524576-4524659)
chr1 (19-86)||(40650038-40650104)
chr1 (243-319)||(25071631-25071707)
chr1 (325-432)||(36486329-36486438)
chr1 (250-307)||(5346050-5346107)
chr1 (325-354)||(39386500-39386529)
chr1 (19-71)||(40649777-40649829)
[»] chr2 (13 HSPs)
chr2 (326-432)||(36199507-36199615)
chr2 (248-312)||(10680114-10680178)
chr2 (7-90)||(22191529-22191612)
chr2 (368-432)||(2123481-2123545)
chr2 (325-361)||(2190626-2190662)
chr2 (246-307)||(11814071-11814132)
chr2 (325-354)||(32678042-32678071)
chr2 (324-361)||(33199545-33199582)
chr2 (325-361)||(331806-331842)
chr2 (324-381)||(2123467-2123526)
chr2 (250-306)||(14433833-14433889)
chr2 (14-90)||(32014000-32014076)
chr2 (282-322)||(36171750-36171790)
[»] chr8 (2 HSPs)
chr8 (256-306)||(41894891-41894941)
chr8 (325-432)||(2053238-2053347)
[»] chr6 (4 HSPs)
chr6 (325-432)||(34192213-34192322)
chr6 (7-90)||(8446924-8447007)
chr6 (7-90)||(8455728-8455811)
chr6 (252-312)||(22712210-22712270)
[»] scaffold0019 (1 HSPs)
scaffold0019 (322-354)||(35870-35902)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Original strand, 55264647 - 55265084
Alignment:
Q  7 agacatagactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggtttgctccaagcaaaatag 106  Q
    ||||| ||||| ||||||||||||||||||| |||  |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55264647 agacacagactcttttgaaatattaatagattcagagactaatttgagagtcacttgtaaagacatggaccaaattggtggtttgctccaagcaaaatag 55264746  T
Q  107 gggactaaaattgaacaaaatttatgcaggacta-tgtgtgttaattcaaggtttaaatatgcagttttctcgttgcaactttggcctcctaataaaaaa 205  Q
    |||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  55264747 gggactaaaattgaacaaaatttatgtaggacgactatgtgttaattcaaggtttaaatatgcagttttctcattgcaattttggccttctaataaaaaa 55264846  T
Q  206 ttaataataattcatctatctttagagaaatgtactcttgcctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggt 305  Q
     |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55264847 ataataataattcatctatctttagagaaatgtactcttgcctgtatcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggt 55264946  T
Q  306 tctagactcgacaccaagagaaatatgctcttttgaccctctaactttaggaaaatgt-tttcttgaccctttatctgtagggaaataagatatttcgac 404  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| || ||||||||||| ||||||||||||||||||||||    
T  55264947 tcgagactcgacaccaagaaaaatatgctcttttgaccctctaactttaggaaaatatgtttttttaccctttatctttagggaaataagatatttcgac 55265046  T
Q  405 tctttatctttacaaaaagttgcga-tttggccccatg 441  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  55265047 tctttatctttacaaaaagttgcgattttggccccatg 55265084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 432
Target Start/End: Complemental strand, 43336181 - 43336074
Alignment:
Q  326 aaatatgctcttttgaccctctaactttagg--aaaatgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaag 423  Q
    ||||||| |||||||||||||||||||||||  || ||||| | |||||| | ||||| || ||||||||||| ||| ||| ||||||||||||||||||    
T  43336181 aaatatgatcttttgaccctctaactttagggaaatatgttcttttgaccttctatctttatggaaataagatgttt-gaccctttatctttacaaaaag 43336083  T
Q  424 ttgcgattt 432  Q
    |||||||||    
T  43336082 ttgcgattt 43336074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 16291924 - 16291815
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttagg--aaaatgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaa 422  Q
    ||||||||||||||||||||||||||||||||  || ||| | | ||  |||| ||||| |||||||||||||| ||| | | | |||||||||||||||    
T  16291924 gaaatatgctcttttgaccctctaactttagggaaatatgctcttttagccctctatctttagggaaataagatcttttgtccccttatctttacaaaaa 16291825  T
Q  423 gttgcgattt 432  Q
    |||| |||||    
T  16291824 gttgtgattt 16291815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 44137441 - 44137366
Alignment:
Q  19 ttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggtttgctc 94  Q
    ||||||||||||||||||  |||  ||||||||||| |||||||| ||| | | ||||||||||||||||||||||    
T  44137441 ttttgaaatattaatagagtcagagactaatttgagaatcacttacaaaaataaggaccaaattggtggtttgctc 44137366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 4342052 - 4341967
Alignment:
Q  245 gcctatctcccgagaagtc-atttggttgagagaaactctcttcaacctcaaggaactcggttctagactcgacaccaagagaaat 329  Q
    |||| |||||||||||||| |  ||||||||||||||||||||||||||| || |||||||||| |||| || |||| ||| ||||    
T  4342052 gcctgtctcccgagaagtccacgtggttgagagaaactctcttcaacctcgagaaactcggttcaagacccggcaccgagaaaaat 4341967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 789856 - 789781
Alignment:
Q  243 ttgcctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagactcgaca 318  Q
    |||| ||||| |||||||||||||||||||||||   |||| ||||| |||||| |||||||||| ||| ||||||    
T  789856 ttgcatatcttccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactcggttcgagattcgaca 789781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 12141842 - 12141786
Alignment:
Q  250 tctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggtt 306  Q
    ||||||||||||| | ||||||||||| | |||||||||||||| || |||||||||    
T  12141842 tctcccgagaagttacttggttgagagtatctctcttcaacctcgagaaactcggtt 12141786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 13302188 - 13302113
Alignment:
Q  20 tttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggtttgctcc 95  Q
    |||||||| ||||||||  |||| ||||||||||| || ||||| ||||||| ||| ||| |||||||||| ||||    
T  13302188 tttgaaatgttaatagaagcagggactaatttgagaatgacttacaaagacagggatcaatttggtggtttactcc 13302113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 43698761 - 43698836
Alignment:
Q  244 tgcctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagactcgacacca 321  Q
    ||||| ||||||||||||||| ||||||  ||||  ||||||||||||||||| |||| ||||| |||| || |||||    
T  43698761 tgcctgtctcccgagaagtcacttggtt--gagattctctcttcaacctcaagaaacttggttcaagacccggcacca 43698836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 12101372 - 12101339
Alignment:
Q  322 agagaaatatgctcttttgaccctctaactttag 355  Q
    ||||||||||||| ||||||||||||||||||||    
T  12101372 agagaaatatgcttttttgaccctctaactttag 12101339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 322 - 432
Target Start/End: Original strand, 47113173 - 47113285
Alignment:
Q  322 agagaaatatgctcttttgaccctctaactttagg--aaaatgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaa 419  Q
    |||||||||||||||||||||||||||||||||||  || ||| | | ||| |||| ||||| |||||||||||||| ||| | | ||||||||||| ||    
T  47113173 agagaaatatgctcttttgaccctctaactttagggaaatatgctcttttggccctctatctttagggaaataagatcttttggccctttatctttataa 47113272  T
Q  420 aaagttgcgattt 432  Q
    |||||||||||||    
T  47113273 aaagttgcgattt 47113285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 40773486 - 40773404
Alignment:
Q  245 gcctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagactcgacaccaagagaa 327  Q
    |||| |||||||||||||||  ||||||||||||||||||||| ||||| ||||||| ||||| |||| || |||| ||||||    
T  40773486 gcctgtctcccgagaagtcacgtggttgagagaaactctcttcgacctcgaggaacttggttcgagacccggcaccgagagaa 40773404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 22589261 - 22589369
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttaggaaa-atgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaag 423  Q
    ||||||||||||||||||||||||||||||  ||| ||| | | |||  ||| |||||  ||| ||||||| | ||| |||||||||||||||||||||     
T  22589261 gaaatatgctcttttgaccctctaactttataaaatatgctcttttgttcctctatcttcaggaaaataagctcttttgactctttatctttacaaaaaa 22589360  T
Q  424 ttgcgattt 432  Q
    |||| ||||    
T  22589361 ttgcaattt 22589369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 422
Target Start/End: Original strand, 21801304 - 21801402
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttaggaaaat--gttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaa 422  Q
    |||||||| ||||||||||||||||||||| ||||||  ||| | |||||  ||||| | ||| |||||||| | ||| ||| |||||||||||||||||    
T  21801304 gaaatatgttcttttgaccctctaactttatgaaaatatgttattttgactatttattt-tagagaaataagctcttttgaccctttatctttacaaaaa 21801402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 10877243 - 10877134
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttaggaaaatgttttctt--gaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaa 422  Q
    |||||||||| |||||||||| ||||| |||| |||| |  ||||  || ||| || || ||| |||||||||||||| | | ||||||||| | |||||    
T  10877243 gaaatatgcttttttgaccctttaactctagggaaatatgctcttttgatcctctacctttagagaaataagatattttggccctttatcttaataaaaa 10877144  T
Q  423 gttgcgattt 432  Q
    ||||||||||    
T  10877143 gttgcgattt 10877134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 39296595 - 39296624
Alignment:
Q  325 gaaatatgctcttttgaccctctaacttta 354  Q
    ||||||||||||||||||||||||||||||    
T  39296595 gaaatatgctcttttgaccctctaacttta 39296624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 31494004 - 31494040
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttaggaaaat 361  Q
    |||||||||||||||||||||||||| | ||||||||    
T  31494004 gaaatatgctcttttgaccctctaacataaggaaaat 31494040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 34296590 - 34296481
Alignment:
Q  325 gaaatatgctcttttgaccctctaacttta-ggaaa-atgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaa 422  Q
    |||||||||||||||||||||||||||||| ||||| ||| | | |||||||||||||| |||||||||||| | | |  |||||||||||||  |||||    
T  34296590 gaaatatgctcttttgaccctctaactttatggaaatatgctcttttgaccctttatctttagggaaataagctctcttaactctttatctttcaaaaaa 34296491  T
Q  423 gttgcgattt 432  Q
    ||||| ||||    
T  34296490 gttgcaattt 34296481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 39840914 - 39840990
Alignment:
Q  14 gactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggttt 90  Q
    |||| |||||||||||||||| |   ||||||||||||||| |||||||| ||||| || || ||||||||||||||    
T  39840914 gactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaagatatagatcaaattggtggttt 39840990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 48338569 - 48338650
Alignment:
Q  9 acatagactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggttt 90  Q
    ||||||||| |||||| |||||||||||  |||  ||||||||||  |||||||| ||| ||||||  ||||||||||||||    
T  48338569 acatagactattttgatatattaatagagtcagagactaatttgataatcacttacaaatacatggttcaaattggtggttt 48338650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 432
Target Start/End: Original strand, 36033645 - 36033757
Alignment:
Q  322 agagaaatatgctcttttgaccctctaactttaggaaaatgttttct--tgaccctttatctgtagggaaataagatatttcgactctttatctttacaa 419  Q
    ||||||||||| ||||||||||||||||||||| | |||| |  |||  | ||||| ||||| || ||||||||| | ||| |||  | ||| |||||||    
T  36033645 agagaaatatgttcttttgaccctctaactttatggaaatatgctcttctaaccctctatctttaaggaaataagctcttttgaccatctatatttacaa 36033744  T
Q  420 aaagttgcgattt 432  Q
    |||||||| ||||    
T  36033745 aaagttgcaattt 36033757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 39840716 - 39840659
Alignment:
Q  14 gactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagaca 71  Q
    |||| ||||||||||||||||||  |||  ||||||||||| |||||||| |||||||    
T  39840716 gactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagaca 39840659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 3821003 - 3821051
Alignment:
Q  383 tagggaaataagatatttcgactctttatctttacaaaaagttgcgatt 431  Q
    |||||||||| | | ||| ||| ||||||||||||||||||||||||||    
T  3821003 tagggaaatatgctcttttgaccctttatctttacaaaaagttgcgatt 3821051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 55447010 - 55446934
Alignment:
Q  7 agacatagactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattg 83  Q
    |||||| |||| ||||||||||||||||||  || | | ||||||||  |||||||| ||||| | |||||||||||    
T  55447010 agacatggactattttgaaatattaatagagtcatggattaatttgacaatcacttacaaagatagggaccaaattg 55446934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 15925942 - 15925889
Alignment:
Q  259 aagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagac 312  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||| ||||    
T  15925942 aagtcatttggttgagagaaactctcttcaacctcgagaaactcggttcgagac 15925889  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 24025113 - 24025222
Alignment:
Q  325 gaaatatgctcttttgaccctctaacttta-ggaaa-atgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaa 422  Q
    |||||||||||||||||||||||||||||| ||||| ||| | | || || || ||||| ||| |||||||| | ||| ||| |||||||||||||||||    
T  24025113 gaaatatgctcttttgaccctctaactttacggaaatatgctcttttaacactctatctttagagaaataagctcttttgaccctttatctttacaaaaa 24025212  T
Q  423 gttgcgattt 432  Q
    ||||| ||||    
T  24025213 gttgcaattt 24025222  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 12640244 - 12640315
Alignment:
Q  25 aatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggtttgctcca 96  Q
    ||||||||||||| |||  ||||||||||| |||||||| ||||||| ||||||| ||| |||||| |||||    
T  12640244 aatattaatagattcagtgactaatttgagaatcacttacaaagacagggaccaatttgatggtttactcca 12640315  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 9637804 - 9637850
Alignment:
Q  44 actaatttgaggatcacttataaagacatggaccaaattggtggttt 90  Q
    ||||||||||| |||||||| ||||||| ||||||||||| ||||||    
T  9637804 actaatttgagaatcacttacaaagacacggaccaaattgatggttt 9637850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 432
Target Start/End: Complemental strand, 21376162 - 21376049
Alignment:
Q  321 aagagaaatatgctcttttgaccctctaactttaggaaa--atgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttaca 418  Q
    ||||||||| |||| |||||| |||||||||||| ||||  ||||||| || ||||||||||| |||| | | ||||| ||| |   ||||||||| |||    
T  21376162 aagagaaatgtgctattttgatcctctaactttatgaaaatatgttttttttaccctttatctttaggaatacaagatcttttggtcctttatcttcaca 21376063  T
Q  419 aaaagttgcgattt 432  Q
    |||| |||| ||||    
T  21376062 aaaaattgcaattt 21376049  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 8840042 - 8840118
Alignment:
Q  14 gactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggttt 90  Q
    |||| ||||||||||||||||||  | || |||||| |||| ||| |||| ||| ||| ||||||||||| ||||||    
T  8840042 gactattttgaaatattaatagagtcggggactaatctgagaatcccttacaaatacagggaccaaattgatggttt 8840118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 30316595 - 30316519
Alignment:
Q  243 ttgcctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagactcgacac 319  Q
    |||| ||||| ||||||| |||||||||||||||   |||| ||||| |||||| |||||||||  ||| |||||||    
T  30316595 ttgcatatcttccgagaaatcatttggttgagagtttctcttttcaatctcaagaaactcggtttgagattcgacac 30316519  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 432
Target Start/End: Complemental strand, 28552559 - 28552451
Alignment:
Q  326 aaatatgctcttttgaccctctaactttaggaaaatgttttcttg--accctttatctgtagggaaataagatatttcgactctttatctttacaaaaag 423  Q
    |||||||||||||||||| |||||||||| |||||| |  ||||   ||||| ||||| |||||||||||| | ||| ||| ||| ||||||||||||||    
T  28552559 aaatatgctcttttgaccttctaactttatgaaaatatgctcttttaaccctctatctttagggaaataagctcttttgacccttaatctttacaaaaag 28552460  T
Q  424 ttgcgattt 432  Q
    |||| ||||    
T  28552459 ttgcaattt 28552451  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 23802675 - 23802592
Alignment:
Q  245 gcctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagactcgacaccaagagaaa 328  Q
    |||| ||||||||||||||| |||||||||||   |||||||||||||| || |||||||||| |||| || |||| |||||||    
T  23802675 gcctgtctcccgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggttcgagacccggcacccagagaaa 23802592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 432
Target Start/End: Complemental strand, 6285418 - 6285310
Alignment:
Q  326 aaatatgctcttttgaccctctaactttaggaaaatgttttctt--gaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaag 423  Q
    ||||||||||||||||||||||||||||| |||||| |  ||||  |||||| ||| | |||||| ||||| | | | |||  |||||||||||||||||    
T  6285418 aaatatgctcttttgaccctctaactttatgaaaatatgctcttttgaccctctatatttagggatataagctctattgaccatttatctttacaaaaag 6285319  T
Q  424 ttgcgattt 432  Q
    |||| ||||    
T  6285318 ttgcaattt 6285310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 14366399 - 14366499
Alignment:
Q  327 aatatgctcttttgaccctctaactttaggaaa--atgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaagt 424  Q
    |||||||||||||||| ||||||||||||||||  ||| ||| ||| |||| ||||| || ||||||||||| |||   | ||| |||||||||||||||    
T  14366399 aatatgctcttttgacactctaactttaggaaaatatgatttgttgcccctctatctttaaggaaataagatctttttgcccttcatctttacaaaaagt 14366498  T
Q  425 t 425  Q
    |    
T  14366499 t 14366499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 4524576 - 4524659
Alignment:
Q  243 ttgcctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagactcgacaccaagaga 326  Q
    |||||||| | ||||||| |||||||||||||||   ||||||||||||| ||| |||||||||| | || ||||||| |||||    
T  4524576 ttgcctattttccgagaaatcatttggttgagagtttctctcttcaaccttaagaaactcggttcgaaacccgacaccgagaga 4524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 40650038 - 40650104
Alignment:
Q  19 ttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtg 86  Q
    ||||||||||||||| ||   |||| |||||||||| |||||||| ||||||||||||||||||||||    
T  40650038 ttttgaaatattaatggagttagga-ctaatttgagaatcacttacaaagacatggaccaaattggtg 40650104  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 25071631 - 25071707
Alignment:
Q  243 ttgcctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagactcgacac 319  Q
    |||| ||||| |||||||||||||||||||||||   |||| ||||| |||||| |||||||||  ||| |||||||    
T  25071631 ttgcatatcttccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactcggtttgagattcgacac 25071707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 36486438 - 36486329
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttaggaaaatgt--tttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaa 422  Q
    ||||||||||||||||||  |||||||||  |||||| |  ||| ||||||||  |||| |||  |||||||   ||| ||| |||||||||||||||||    
T  36486438 gaaatatgctcttttgactgtctaactttgtgaaaatatatttttttgaccctcgatctttagataaataagcacttttgaccctttatctttacaaaaa 36486339  T
Q  423 gttgcgattt 432  Q
    ||||| ||||    
T  36486338 gttgcaattt 36486329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 5346107 - 5346050
Alignment:
Q  250 tctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttc 307  Q
    ||||||||||||||| |||||||||||   ||||||||||| |  |||||||||||||    
T  5346107 tctcccgagaagtcacttggttgagagtttctctcttcaactttgaggaactcggttc 5346050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 39386500 - 39386529
Alignment:
Q  325 gaaatatgctcttttgaccctctaacttta 354  Q
    ||||||||||||||||||||||||||||||    
T  39386500 gaaatatgctcttttgaccctctaacttta 39386529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 40649829 - 40649777
Alignment:
Q  19 ttttgaaatattaatagatccaggaactaatttgaggatcacttataaagaca 71  Q
    ||||||||||||||||||   | ||||||||||||| |||||||| |||||||    
T  40649829 ttttgaaatattaatagaattaagaactaatttgagaatcacttacaaagaca 40649777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 36199507 - 36199615
Alignment:
Q  326 aaatatgctcttttgaccctctaactttaggaaaatgt--tttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaag 423  Q
    |||||||||||||||||| | |||||||| |||||| |  ||| ||||| || ||||| |||| |||||||  ||||  || ||||||||||||||||||    
T  36199507 aaatatgctcttttgaccatttaactttatgaaaatatgcttttttgacactctatctttaggaaaataagcaattttaaccctttatctttacaaaaag 36199606  T
Q  424 ttgcgattt 432  Q
    |||| ||||    
T  36199607 ttgcaattt 36199615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 10680178 - 10680114
Alignment:
Q  248 tatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagac 312  Q
    |||||| |||||||| |  ||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  10680178 tatctctcgagaagttacgtggttgagagatactctcttcaacctcaaagaactcggttcgagac 10680114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 22191529 - 22191612
Alignment:
Q  7 agacatagactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggttt 90  Q
    ||||||||||| |||| |||||||||||||  |||| |||||||||||  | ||||| |||| || ||| ||||||||||||||    
T  22191529 agacatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaaggcaaggatcaaattggtggttt 22191612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 432
Target Start/End: Original strand, 2123481 - 2123545
Alignment:
Q  368 ttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaagttgcgattt 432  Q
    |||| ||| ||||| |||||||||||| | ||| ||| |||||||||||||||||||||| ||||    
T  2123481 ttgatcctctatctttagggaaataagttcttttgaccctttatctttacaaaaagttgcaattt 2123545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 2190626 - 2190662
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttaggaaaat 361  Q
    |||||||||||||||||||||||||||| ||||||||    
T  2190626 gaaatatgctcttttgaccctctaacttaaggaaaat 2190662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 11814132 - 11814071
Alignment:
Q  246 cctatctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttc 307  Q
    |||||||| ||||| ||||||||||||||||   |||||||||||||| || ||||| ||||    
T  11814132 cctatctcacgagaggtcatttggttgagagtttctctcttcaacctcgagaaactcagttc 11814071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 32678071 - 32678042
Alignment:
Q  325 gaaatatgctcttttgaccctctaacttta 354  Q
    ||||||||||||||||||||||||||||||    
T  32678071 gaaatatgctcttttgaccctctaacttta 32678042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 33199545 - 33199582
Alignment:
Q  324 agaaatatgctcttttgaccctctaactttaggaaaat 361  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  33199545 agaaatatgctcttttgaccttctaactttagggaaat 33199582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 331806 - 331842
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttaggaaaat 361  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  331806 gaaatatgctcttttgaccctctaacttaagggaaat 331842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 2123467 - 2123526
Alignment:
Q  324 agaaatatgctcttttgaccctctaactttaggaaaat--gttttcttgaccctttatct 381  Q
    |||||||||||||||||| |||||| ||||||| ||||  ||| | ||||||||||||||    
T  2123467 agaaatatgctcttttgatcctctatctttagggaaataagttcttttgaccctttatct 2123526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 14433833 - 14433889
Alignment:
Q  250 tctcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggtt 306  Q
    ||||| ||||||||| |||||||||||   |||||||||||||| || |||||||||    
T  14433833 tctcctgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggtt 14433889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 32014000 - 32014076
Alignment:
Q  14 gactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggttt 90  Q
    |||| ||||||||||| ||||||  ||   ||||||||||| |||||||| ||| |||  |||||||||||||||||    
T  32014000 gactattttgaaatatcaatagagtcatagactaatttgagaatcacttacaaatacagcgaccaaattggtggttt 32014076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 36171750 - 36171790
Alignment:
Q  282 ctcttcaacctcaaggaactcggttctagactcgacaccaa 322  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  36171750 ctcttcaacctcaagaaactcggttcaagactggacaccaa 36171790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 41894941 - 41894891
Alignment:
Q  256 gagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggtt 306  Q
    |||||||||  ||||||||||||||||| ||||||||| ||||||||||||    
T  41894941 gagaagtcacgtggttgagagaaactcttttcaacctcgaggaactcggtt 41894891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 2053238 - 2053347
Alignment:
Q  325 gaaatatgctcttttgaccctctaacttta-ggaaa-atgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaa 422  Q
    ||||||||||||||||| | |||||||||| ||||| ||| | | || ||||| ||||| ||| |||||||| | ||| ||| ||||| ||||| |||||    
T  2053238 gaaatatgctcttttgatcatctaactttatggaaatatgctcttttaaccctctatctttagagaaataagctcttttgaccctttacctttataaaaa 2053337  T
Q  423 gttgcgattt 432  Q
    ||||| ||||    
T  2053338 gttgcaattt 2053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 34192322 - 34192213
Alignment:
Q  325 gaaatatgctcttttgaccctctaactttagg--aaaatgttttcttgaccctttatctgtagggaaataagatatttcgactctttatctttacaaaaa 422  Q
    |||||||||| ||||||||||| |||||||||  |||||    | ||| |||| ||||| |||| |||||||||||||   | ||||||||||||| |||    
T  34192322 gaaatatgcttttttgaccctcaaactttagggaaaaatacaattttggccctctatctttaggaaaataagatattttagccctttatctttacataaa 34192223  T
Q  423 gttgcgattt 432  Q
    ||||||||||    
T  34192222 gttgcgattt 34192213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 8447007 - 8446924
Alignment:
Q  7 agacatagactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggttt 90  Q
    |||||| |||| ||||||||||||||||||  |||  ||||||||||  |||||||||||||| | | | ||||||| ||||||    
T  8447007 agacattgactattttgaaatattaatagaatcagtgactaatttgaaaatcacttataaagaaaggaatcaaattgatggttt 8446924  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 8455811 - 8455728
Alignment:
Q  7 agacatagactgttttgaaatattaatagatccaggaactaatttgaggatcacttataaagacatggaccaaattggtggttt 90  Q
    |||||| |||| ||||||||||||||||||  |||  ||||||||||  |||||||||||||| | | | ||||||| ||||||    
T  8455811 agacattgactattttgaaatattaatagaatcagtgactaatttgaaaatcacttataaagaaaggaatcaaattgatggttt 8455728  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 22712270 - 22712210
Alignment:
Q  252 tcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttctagac 312  Q
    |||||||||||||||||||| |||| | |||||||||| ||| || |||| ||||| ||||    
T  22712270 tcccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttcgagac 22712210  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 35870 - 35902
Alignment:
Q  322 agagaaatatgctcttttgaccctctaacttta 354  Q
    |||||||||||||||||||| ||||||||||||    
T  35870 agagaaatatgctcttttgatcctctaacttta 35902  T

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