View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4923-Insertion-6 (Length: 321)
Name: NF4923-Insertion-6
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4923-Insertion-6 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 37814324 - 37814012
Alignment:
| Q |
8 |
gctataatatatataggtataacctgaatgcttgacattatcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagca |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37814324 |
gctataata-atataggtataacctgaatgcttgaaattatcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagca |
37814226 |
T |
|
| Q |
108 |
taataaacacctaatcaactgttaattatttctacttgattannnnnnnnnnnnctgagcaatagtatttttacttgattgtgtaggcaaagatggacaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37814225 |
taataaacacctaatcaactgttaattatttctacttgattatttttcttttttctgagcaatagtatttttacttgattgtgtaggcaaagatggacaa |
37814126 |
T |
|
| Q |
208 |
gtgcatgtgtggctcagatacctgctattttcatgaacccgctggagctgtaatcgcaagacttgcaagatcccaactaacttcgcctgaacctcatcgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
37814125 |
gtgcatgtgtggctcagatacctgctattttcatgaacccgctggtgctgtaatcgcaagacttgcaagatcccaaccaacttcgcctgagcctcatcgt |
37814026 |
T |
|
| Q |
308 |
accactgtcaatcc |
321 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
37814025 |
aacactgtcaatcc |
37814012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 37646519 - 37646831
Alignment:
| Q |
8 |
gctataatatatataggtataacctgaatgcttgacattatcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagca |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37646519 |
gctataata-atataggtataacctgaatgcttgatattatcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagca |
37646617 |
T |
|
| Q |
108 |
taataaacacctaatcaactgttaattatttctacttgattannnnnnnnnnnnctgagcaatagtatttttacttgattgtgtaggcaaagatggacaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37646618 |
taataaacacctaatcaactgttaattatttctacttgattatttttcttttttctgagcaatagtatttttacttgattgtgtaggcacagatggacaa |
37646717 |
T |
|
| Q |
208 |
gtgcatgtgtggctcagatacctgctattttcatgaacccgctggagctgtaatcgcaagacttgcaagatcccaactaacttcgcctgaacctcatcgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
37646718 |
gtgcatgtgtggctcagatacctgctattttcatgaacccactggagctgtaatcgcaagacttgctagatcccaaccaacttcgcctgaacctcatcgt |
37646817 |
T |
|
| Q |
308 |
accactgtcaatcc |
321 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
37646818 |
aacactgtcaatcc |
37646831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 37809200 - 37809089
Alignment:
| Q |
32 |
tgaatgcttgacattatcatccttttgtagtttgccaatcaaattaattatatacacatcaccttatcttttagcataataaacacctaatcaactgtta |
131 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
37809200 |
tgaatgcttgacattgtcatccttttgcagtttgccaatcaagtt--ttat---cacatcaccttatcttttagcataacaaacacctaatcagctgtta |
37809106 |
T |
|
| Q |
132 |
attatttctacttgatt |
148 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37809105 |
attatttctacttgatt |
37809089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 37637365 - 37637422
Alignment:
| Q |
264 |
caagacttgcaagatcccaactaacttcgcctgaacctcatcgtaccactgtcaatcc |
321 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37637365 |
caagacttgcaagatcccaaccaacttcgcctgaacctcatcgtacccctgtcaatcc |
37637422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 37637029 - 37637095
Alignment:
| Q |
78 |
attatatacacatcaccttatcttttagcataataaacacctaatcaactgttaattatttctactt |
144 |
Q |
| |
|
|||||||| |||| ||||| || |||||||||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
37637029 |
attatatatacatgaccttgtcctttagcataataaatacctaatcagtggttaagtatttctactt |
37637095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 37637236 - 37637293
Alignment:
| Q |
249 |
ctggagctgtaatcgcaagacttgcaagatcccaactaacttcgcctgaacctcatcg |
306 |
Q |
| |
|
||||| ||||| || |||||||||||||||| |||| | |||| |||||||||||||| |
|
|
| T |
37637236 |
ctggacctgtagtcacaagacttgcaagatctcaaccagcttcccctgaacctcatcg |
37637293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University