View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4923-Insertion-7 (Length: 309)
Name: NF4923-Insertion-7
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4923-Insertion-7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 309
Target Start/End: Original strand, 43219189 - 43219420
Alignment:
| Q |
78 |
gaagttccctcaatggtcctcaagagatatacacttacatatccggaataaatccccaagaaaagatataaaattatcatctctgttagtatcattcctc |
177 |
Q |
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| T |
43219189 |
gaagttcccttaattgtcctccagagacgtacacttacatatccggaagcaatccccaggaaaagatacaaaattatcatacctgttaacagcattcctc |
43219288 |
T |
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| Q |
178 |
gggaagctggtgagataaaacccagggctgcgaaaacaatagtaacagcagccattccgagaatctgaacctagtctccaaccatcacacggaggagctt |
277 |
Q |
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| T |
43219289 |
gggatgctggtgacatgaaacccaaggctgcgaacacaattgtaacaccagccatgccaagaatctgaaccccgtctccaaccatcacacaaaggagttt |
43219388 |
T |
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| Q |
278 |
tgagcaaacaagttccctaaatacatcaccca |
309 |
Q |
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| T |
43219389 |
tgagcaacctggttccctaaatacatcaccca |
43219420 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 43273497 - 43273429
Alignment:
| Q |
8 |
tatggttccatcatgatgcataataaccaaaatcaaaattcagtgctgttagaatcgtaaaagtaattc |
76 |
Q |
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| T |
43273497 |
tatggttccatcatgatgcataataaccaaaatcaaaattcagtgctgttagaatcgtaaaagtaattc |
43273429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 43219106 - 43219141
Alignment:
| Q |
41 |
caaaattcagtgctgttagaatcgtaaaagtaattc |
76 |
Q |
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| T |
43219106 |
caaaattcagtgctgttagaatcgtaaaagcaattc |
43219141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 307
Target Start/End: Complemental strand, 37071519 - 37071352
Alignment:
| Q |
140 |
aagatataaaattatcatctctgttagtatcattcctcgggaagctggtgagataaaacccagggctgcgaaaacaatagtaacagcagccattccgaga |
239 |
Q |
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| T |
37071519 |
aagatataaaatgatcatcccagttagtagcatccctcgggatgctggagacatgaaaccaagtgctgcaaaaacaatagtaacacctgccattccaaga |
37071420 |
T |
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| Q |
240 |
atctgaacctagtctccaaccatcacacggaggagctttgagcaaacaagttccctaaatacatcacc |
307 |
Q |
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| T |
37071419 |
atttgaaccccatctccaaccattacacacagaagctttgagcattcaggctccctaaatacatcacc |
37071352 |
T |
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