View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4923-Insertion-8 (Length: 211)
Name: NF4923-Insertion-8
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4923-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 8783661 - 8783457
Alignment:
| Q |
7 |
aatttctagcgtaattcaagccttcaagaactccccataattccgctatataagcgctacacatcccaatacttttagtgaatccccctagccattcacc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8783661 |
aatttctagcgtaattcaagccttcaagaactccccataattccgttatatatgcgctacacatcccaatacttttagcgaatccccctagccattcacc |
8783562 |
T |
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| Q |
107 |
atcacaacctctaataacaccgccacaaccagctacaccattgctgctacaagccccatcagtattcaatttaacccacccctccgccggaggcttccaa |
206 |
Q |
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| T |
8783561 |
atcacaacctctaataacaccgccacaaccagctacaccattgttgctacaagccccatcagtattcaatttaacccacccctccgccggaggcttccaa |
8783462 |
T |
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| Q |
207 |
ccaac |
211 |
Q |
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||||| |
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| T |
8783461 |
ccaac |
8783457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 27851401 - 27851197
Alignment:
| Q |
7 |
aatttctagcgtaattcaagccttcaagaactccccataattccgctatataagcgctacacatcccaatacttttagtgaatccccctagccattcacc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27851401 |
aatttctagcgtaattcaagccttcaagaactccccataattctgctaaataagcgcaacacatcccaatacttttagcgaatccccctagccattcacc |
27851302 |
T |
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| Q |
107 |
atcacaacctctaataacaccgccacaaccagctacaccattgctgctacaagccccatcagtattcaatttaacccacccctccgccggaggcttccaa |
206 |
Q |
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| T |
27851301 |
atcacaacctctaataatacctccacaaccggctacaccattactgctacaagctccatcggtattcaatttaacccacccctccgccggaggcttccaa |
27851202 |
T |
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| Q |
207 |
ccaac |
211 |
Q |
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||||| |
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| T |
27851201 |
ccaac |
27851197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 16878489 - 16878591
Alignment:
| Q |
100 |
attcaccatcacaacctctaataacaccgccacaaccagctacaccattgctgctacaagccccatcagtattcaatttaacccacccctccgccggagg |
199 |
Q |
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|||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
16878489 |
attcaccatcacaacctctaataatacctccacaaccggctacaccattactgctacaagctccatcggtattcaatttaacccatccctccgccggagg |
16878588 |
T |
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| Q |
200 |
ctt |
202 |
Q |
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||| |
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| T |
16878589 |
ctt |
16878591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 25636301 - 25636348
Alignment:
| Q |
7 |
aatttctagcgtaattcaagccttcaagaactccccataattccgcta |
54 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
25636301 |
aattcctagcgtaattcaagccttcaagaactccatataattctgcta |
25636348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 18652713 - 18652827
Alignment:
| Q |
7 |
aatttctagcgtaattcaagccttcaagaactccccataattccgctatataagcgctacacatcccaatacttttagtgaatccccctagccattcacc |
106 |
Q |
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||||||||||||| ||||| ||||| | |||||||||||||| | |||||||||||| ||||||| ||| |||||||| || ||||||||||||||||| |
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| T |
18652713 |
aatttctagcgtatttcaatccttccaaaactccccataatttcactatataagcgcaacacatctcaacacttttagcaaagccccctagccattcacc |
18652812 |
T |
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| Q |
107 |
atcacaacctctaat |
121 |
Q |
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||||||||||||||| |
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| T |
18652813 |
atcacaacctctaat |
18652827 |
T |
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