View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4923_high_11 (Length: 267)
Name: NF4923_high_11
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4923_high_11 |
 | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1643 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 809 - 1037
Alignment:
| Q |
17 |
tgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| | |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
809 |
tgccatgaatctcttcaccaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatgggaaca |
908 |
T |
|
| Q |
117 |
taatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
909 |
taatccacagcttaacagttgaagagatactaagttgggtaaatgacaacctgttatccaatttggaaagttgctgccattgtagccttcaatagtgagc |
1008 |
T |
|
| Q |
217 |
ctcttcaagttgctatttggttgtagagc |
245 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |
|
|
| T |
1009 |
ctcttcaagttgttatttggttgaagagc |
1037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 6481371 - 6481211
Alignment:
| Q |
25 |
aactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccac |
124 |
Q |
| |
|
||||||||||| ||||||||||||| | ||| |||||||||||||||||| ||||||| || || ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
6481371 |
aactcttcaccgatgatctttattcttttacagtttgaaatagaaagctccctgagagaggggagttgcccaagtggtggcaaatgagaacataatccac |
6481272 |
T |
|
| Q |
125 |
agcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaa |
185 |
Q |
| |
|
|| || |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6481271 |
agtgacgcatttgaagagatactaagttgggtaaatgacaaccccttatccaatttggaaa |
6481211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 6945914 - 6946140
Alignment:
| Q |
24 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatcca |
123 |
Q |
| |
|
||||||||| || |||||||||||||||| ||| ||||||||||||| |||||||||||| || | ||||||||| || ||||||||||||| | || |
|
|
| T |
6945914 |
aaactcttcgccgatgatctttattccgttacagtttgaaatagaaatctccttgagagaggggaactgcccaagcattggtaaatgggaacatagtaca |
6946013 |
T |
|
| Q |
124 |
cagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgagcctcttca |
223 |
Q |
| |
|
||| ||||| ||||||||| ||||| | ||||||| |||| ||| ||||||||||||| | |||||||||||| | || |||||| |||||| |
|
|
| T |
6946014 |
cagtccttcagtttaagagatactaagtttgataaatgaaaaccacttagccaatttggaaagctactgccattgtagtatgtgatggtgagcttcttca |
6946113 |
T |
|
| Q |
224 |
agttgctatttggttgtagagcctcaa |
250 |
Q |
| |
|
||||||| |||||||| |||||||||| |
|
|
| T |
6946114 |
agttgctctttggttgaagagcctcaa |
6946140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 6795997 - 6795862
Alignment:
| Q |
28 |
tcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccacagc |
127 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||| || |||||||| |||| || ||||| ||||||||||||| || |
|
|
| T |
6795997 |
tcttcaccaatgatcattattccgtcacatcttgaaatggaaaggtccttgagagaggggagctgccctagtgctggcaaatcggaacataatccatagt |
6795898 |
T |
|
| Q |
128 |
ttaacagttgaagagataccaagttgggtaaatgac |
163 |
Q |
| |
|
| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
6795897 |
cttgcagttgaagagatactaagttggataaatgac |
6795862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 8470192 - 8470365
Alignment:
| Q |
13 |
ttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatggg |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | ||| | | |||| ||||||||||||| | || ||||| |||||||||| ||||||| |
|
|
| T |
8470192 |
ttgttgccatgaaactcttcaccaattatctttattccatgacagtcacagatagcaagctccttgagacacgggagctgtccaagtggtggcaaatgga |
8470291 |
T |
|
| Q |
113 |
aacataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaag |
186 |
Q |
| |
|
|||| |||||||||| | || ||||||||| ||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
8470292 |
gacatgatccacagctctgtaatttaagagatactaagtttggtaaatgacaaccccttatccactttggaaag |
8470365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 245
Target Start/End: Complemental strand, 8570305 - 8570120
Alignment:
| Q |
60 |
tgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccacagcttaacagttgaagagataccaagttgggtaaa |
159 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||| | ||| ||||||||||| ||| |||| ||||||||| |||||||||||| |
|
|
| T |
8570305 |
tgaaatagaaagctccttgagataggggagctgcccaagtggcggcaacatggaacataatctacactggtgtagtttaagagatactaagttgggtaaa |
8570206 |
T |
|
| Q |
160 |
tgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgagcctcttcaagttgctatttggttgtagagc |
245 |
Q |
| |
|
|| ||||| ||| ||||||||||||| | |||||||||||| | || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8570205 |
agaaaacccattaaccaatttggaaagctactgccattgtagtatgtgatggtgagcctcttcaagttgctatttggttgaagagc |
8570120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 6555845 - 6555613
Alignment:
| Q |
16 |
ttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaac |
115 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| ||||| | |||| ||||| | |||||||||||| || || ||||||| || |||| ||||| |
|
|
| T |
6555845 |
ttgccataaaactcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaac |
6555746 |
T |
|
| Q |
116 |
ataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgag |
215 |
Q |
| |
|
|||| ||| | |||| ||||||||| ||||||||||||||||||||| ||| |||||||||||| | || || |||||| | ||| |||| |
|
|
| T |
6555745 |
ataacttacaacccttaagttcaagagatactaagttgggtaaatgacaaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgag |
6555646 |
T |
|
| Q |
216 |
cctcttcaagttgctatttggttgtagagcctc |
248 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||| |
|
|
| T |
6555645 |
cttcttcaagttgctatttggttttagagcctc |
6555613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 5262423 - 5262565
Alignment:
| Q |
18 |
gccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat |
117 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||| | ||||| ||||||||||||||| || ||||| ||||||| ||||||||||| ||| ||||||| |
|
|
| T |
5262423 |
gccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctctttaagagagggaagcttcccaagtggtggcaaccgggaacaa |
5262522 |
T |
|
| Q |
118 |
aatccacagcttaacagttgaagagataccaagttgggtaaat |
160 |
Q |
| |
|
|||||||| || ||||| ||| |||||||||||| |||||| |
|
|
| T |
5262523 |
aatccacatctattcagttcaagggataccaagttgagtaaat |
5262565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 5279299 - 5279406
Alignment:
| Q |
18 |
gccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat |
117 |
Q |
| |
|
||||| |||||||||||| || |||| |||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||| || ||| |||| |
|
|
| T |
5279299 |
gccataaaactcttcaccgataatctctattccatcacattctgaaatagaaagctccttaagagagggaagctgcccaagtggtggaaactggaaacaa |
5279398 |
T |
|
| Q |
118 |
aatccaca |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
5279399 |
aatccaca |
5279406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 6528267 - 6528047
Alignment:
| Q |
28 |
tcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccacagc |
127 |
Q |
| |
|
|||||| |||||||||||||||| ||||| | ||| ||||| | ||| |||||||| || || ||||| |||| |||| ||||||||| ||||| | |
|
|
| T |
6528267 |
tcttcatcaatgatctttattccttcacaatcataaacggaaagtttcttaagagaagggagttgtccaaggggtggcaaacaggaacataacccacaac |
6528168 |
T |
|
| Q |
128 |
ttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgagcctcttcaagtt |
227 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| ||| |||||||||||| | || || |||||| | || ||||| |||||||||| |
|
|
| T |
6528167 |
cattcagttgaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagtt |
6528068 |
T |
|
| Q |
228 |
gctatttggttgtagagcctc |
248 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
6528067 |
gctatttggttgtatagcctc |
6528047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 8453278 - 8453502
Alignment:
| Q |
24 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatcca |
123 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | ||||||||||||| ||||||| | || || ||||||||||| ||| |||||||||||| |
|
|
| T |
8453278 |
aaactcttcacctatgatctttattccatcacagtctgaaatagaaagcatcttgagaaaggggagtgtcccaagtggtggcaacaaagaacataatcca |
8453377 |
T |
|
| Q |
124 |
cagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgagcctcttca |
223 |
Q |
| |
|
|| || | ||||||||| ||||| ||||||||| ||||| ||||||||||||||||| | | || ||||| | || || |||||||||| |
|
|
| T |
8453378 |
caaaactgtagattaagagatactaagtttggtaaatgataaccccttatccaatttggaaagctattacctttgtattttgagatggtaagcctcttca |
8453477 |
T |
|
| Q |
224 |
agttgctatttggttgtagagcctc |
248 |
Q |
| |
|
|||| ||||||||||| |||||||| |
|
|
| T |
8453478 |
agtttctatttggttggagagcctc |
8453502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 6734585 - 6734814
Alignment:
| Q |
16 |
ttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaac |
115 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| ||||| | |||| ||||| | |||||||||||| || || |||||| || |||| ||||| |
|
|
| T |
6734585 |
ttgccataaaactcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtattggcaaacaggaac |
6734684 |
T |
|
| Q |
116 |
ataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgag |
215 |
Q |
| |
|
||| ||| | ||||| ||||||||| |||||| ||||||||| |||| ||| |||||||||||| | || || |||||| | || |||| |
|
|
| T |
6734685 |
---atctacaaccattcagttcaagagatactaagttgcgtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgag |
6734781 |
T |
|
| Q |
216 |
cctcttcaagttgctatttggttgtagagcctc |
248 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||| |
|
|
| T |
6734782 |
cttcttcaagttgctatttggttttagagcctc |
6734814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 6450171 - 6450022
Alignment:
| Q |
37 |
atgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccacagcttaacagtt |
136 |
Q |
| |
|
|||||||||||||| | ||| | ||||||| ||||| || ||| | || |||||||||||||| | ||| ||||||| | | ||||||| ||||| |
|
|
| T |
6450171 |
atgatctttattccattacaatctgaaatacggagctctttaagaaatgggagctgcccaagtggcggcaacagggaacaaatttcacagctccgcagtt |
6450072 |
T |
|
| Q |
137 |
gaagagataccaagttgggtaaatgacaacccgttatccaatttggaaag |
186 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
6450071 |
caagagatactaagttgggtaaatgacaacccctcagccaatttggaaag |
6450022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 6730048 - 6729888
Alignment:
| Q |
88 |
agctgcccaagtggtgacaaatgggaacataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagt |
187 |
Q |
| |
|
|||||||||||||| | ||| ||||||| | | ||||||| ||||| ||||||||| ||||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
6730048 |
agctgcccaagtggcggcaacagggaacaaatttcacagctccgcagttcaagagatactaagttgggtaaatgacaacccctcagccaatttggaaagc |
6729949 |
T |
|
| Q |
188 |
tgctgccattgtagccttcaatagtgagcctcttcaagttgctatttggttgtagagcctc |
248 |
Q |
| |
|
| | || ||||| | | || || || | ||||||||| |||||||||||||||||||| |
|
|
| T |
6729948 |
tattacctttgtatcgtgagattgtaagtcacttcaagtttctatttggttgtagagcctc |
6729888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 6840183 - 6840065
Alignment:
| Q |
132 |
cagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgagcctcttcaagttgcta |
231 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || ||| |||| |||||||| | | || |||||| || || ||||| ||| |||||||||| |
|
|
| T |
6840183 |
cagttgaagagatactaagttggataaatgacaagcccttagccaacttggaaagctattacctttgtagtgttttatgttgagcttctccaagttgcta |
6840084 |
T |
|
| Q |
232 |
tttggttgtagagcctcaa |
250 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
6840083 |
tttggttgaagagcctcaa |
6840065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 6140932 - 6141024
Alignment:
| Q |
24 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
116 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||| |||||| ||||||| |||||||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
6140932 |
aaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca |
6141024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 6257848 - 6257940
Alignment:
| Q |
24 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
116 |
Q |
| |
|
||||||| |||||||||||||||||| | ||| |||||| ||||||| |||||||||||| | || ||||||||||| ||| |||||||| |
|
|
| T |
6257848 |
aaactctgaaccaatgatctttattccatgacagcctgaaatggaaagcttcttgagagaagggaacttcccaagtggtggcaactgggaaca |
6257940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 6521533 - 6521387
Alignment:
| Q |
16 |
ttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaac |
115 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| ||||| | |||| ||||| | |||||||||||| || || ||||||| || |||| ||||| |
|
|
| T |
6521533 |
ttgccataaaaatcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaac |
6521434 |
T |
|
| Q |
116 |
ataatccacagcttaacagttgaagagataccaagttgggtaaatgacaa |
165 |
Q |
| |
|
|| | || ||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
6521433 |
atc-tacaatcctt--cagttgaagagatactaagttgggtaaatgacaa |
6521387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 6236371 - 6236463
Alignment:
| Q |
24 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
116 |
Q |
| |
|
||||||| |||||||| | ||||||| | |||| ||| || ||||||| |||||||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
6236371 |
aaactctgaaccaatgaacgttattccatgacatcctgatatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca |
6236463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 6264364 - 6264420
Alignment:
| Q |
60 |
tgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
116 |
Q |
| |
|
|||||| ||||||| |||||||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
6264364 |
tgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca |
6264420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 7586704 - 7586740
Alignment:
| Q |
214 |
agcctcttcaagttgctatttggttgtagagcctcaa |
250 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
7586704 |
agcctcttcaagctgctatttggttgaagagcctcaa |
7586740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 13271936 - 13271844
Alignment:
| Q |
24 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
116 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||| ||||| ||||||| || ||||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
13271936 |
aaactctgaaccaatgatctctattccatgacagccagaaatggaaagcttctcgagagaaggcaactgcccaagtggtggcaactgggaaca |
13271844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 8893 - 8661
Alignment:
| Q |
16 |
ttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaac |
115 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| ||||| | |||| ||||| | |||||||||||| || || ||||||| || |||| ||||| |
|
|
| T |
8893 |
ttgccataaaattcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgctggcaaacaggaac |
8794 |
T |
|
| Q |
116 |
ataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgag |
215 |
Q |
| |
|
|||| ||||| | ||||||||||||||| ||||| |||||||||| |||| ||| ||||||||||||| | || || ||||||| | || |||| |
|
|
| T |
8793 |
ataacccacaacccttcagttgaagagatactaagttcggtaaatgactaccccttagccaatttggaaagctactacctttgtagcatgtgatgttgag |
8694 |
T |
|
| Q |
216 |
cctcttcaagttgctatttggttgtagagcctc |
248 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| |
|
|
| T |
8693 |
cttcttcaagttgctatttggttgtaaagcctc |
8661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 6574711 - 6574486
Alignment:
| Q |
25 |
aactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccac |
124 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| |||||| |||||||||||||| | || ||||| |||||||| | || ||||||| ||||||| |
|
|
| T |
6574711 |
aactcttcaccgatgatctttattccattacaacctgaaatgaaaagctccttgagacatgggagctgtccaagtggcggaaacagggaacaaaatccac |
6574612 |
T |
|
| Q |
125 |
agcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagccttcaatagtgagcctcttcaa |
224 |
Q |
| |
|
| | ||| ||||||||| ||||| ||||||||| ||| | ||| ||||||||||||| |||||||||||||| || || |||||||||| | |
|
|
| T |
6574611 |
aattctgcaggataagagatactaagttaggtaaatgagaacaccttagccaatttggaaagctgctgccattgtagtatttgatggtgagcctctgtag |
6574512 |
T |
|
| Q |
225 |
gttgctatttggttgtagagcctcaa |
250 |
Q |
| |
|
||||||||||||| | |||||||||| |
|
|
| T |
6574511 |
gttgctatttggtcgaagagcctcaa |
6574486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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