View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4923_high_14 (Length: 263)
Name: NF4923_high_14
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4923_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 31241327 - 31241082
Alignment:
| Q |
1 |
tcatcactcacattaatgaatttaacctcatcactcattaatgcatttaacctctcgattttgtactactcggtactcacattaactttgctgtcttctc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241327 |
tcattactcacattaatgaatttaacctcattactcattaatgcatttaacctctcgattttgtactactcggtactcacattaactttgctgtcttctc |
31241228 |
T |
|
| Q |
101 |
agaagcagcagagcaattgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241227 |
agaagcagcagagcaattgtatgccacccaactttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttca |
31241128 |
T |
|
| Q |
201 |
ggggatgttcatgccgccattcaacgtctttcgaggaactccaatc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241127 |
ggggatgttcatgccgccattcaacgtctttcgaggaactccaatc |
31241082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 31255338 - 31255194
Alignment:
| Q |
87 |
tttgctgtcttctcagaagcagcagagcaattgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctc |
186 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
31255338 |
tttgttgtcttctcagagccaccagagcaattgtatgccacccagcttacacagcttcaagagatgggattctttgacacacaagagaacataagggctc |
31255239 |
T |
|
| Q |
187 |
ttattgccacttcaggggatgttcatgccgccattcaacgtcttt |
231 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| || ||||||||| |
|
|
| T |
31255238 |
ttattgccacttcagggaatgttcatgcggccgttgaacgtcttt |
31255194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 7206158 - 7206060
Alignment:
| Q |
133 |
tttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttcaggggatgttcatgccgccattcaacgtcttt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7206158 |
tttcacagcttcaagagatgggattctttgacacacaagaaaacgtaaaagctcttatttccacttcaggggatgttcatgccgcaattcaacgtcttt |
7206060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 9494706 - 9494804
Alignment:
| Q |
116 |
attgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttcaggggatgttcatgc |
214 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| || |||||| |||||||||| |
|
|
| T |
9494706 |
attgtatgctacccagcttacccagcttcaagagatgggattctttgacacacaagagaacttaagggctcttattgctacatcagggaatgttcatgc |
9494804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University