View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4923_low_12 (Length: 267)
Name: NF4923_low_12
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4923_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 15075992 - 15076224
Alignment:
| Q |
18 |
aatgagattacaatcatcatgtttcaatgtcttaatgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattg |
117 |
Q |
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| T |
15075992 |
aatgagattacaatcatcatgtttcaatgtattaatgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattg |
15076091 |
T |
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| Q |
118 |
accaaaatttgaaggaaaccgatagaagattggaaaaagtggataataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaaa |
217 |
Q |
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| T |
15076092 |
accaaaatttgaaggaaactgatagaagattggaaaaagtggataataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaat |
15076191 |
T |
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| Q |
218 |
gacaccaccaccaacaatttatagattaaatat |
250 |
Q |
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| T |
15076192 |
gacaccaccaccaacaatttatagattaaatat |
15076224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 15073198 - 15073431
Alignment:
| Q |
21 |
gagattacaatcatcatgtttcaatgtcttaa----tgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgatt |
116 |
Q |
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| T |
15073198 |
gagatgacaatgatcatgtttcaatgtcttaattaatgctgaaaaaattatgcacgatgatacgtcaatgattgatttgaatgttcttgcttggttgatt |
15073297 |
T |
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| Q |
117 |
gaccaaaatttgaaggaaaccgatagaagattggaaaaagtggataataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaa |
216 |
Q |
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| T |
15073298 |
gatcaaaatttgaaggatattcatagaagattggaagaagtggataataatggtcatccaagtcaagtcatgactactcaaagttaagttcaacttcaaa |
15073397 |
T |
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| Q |
217 |
agacaccaccaccaacaatttatagattaaatat |
250 |
Q |
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| T |
15073398 |
tgacgccaccaccaacaatttatagattaaatat |
15073431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 13308514 - 13308670
Alignment:
| Q |
36 |
atgtttcaatgtcttaatgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaa |
135 |
Q |
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| T |
13308514 |
atgtttcaatgcctgaatgcagggaaaattgtggacaacaatatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggaca |
13308613 |
T |
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| Q |
136 |
ccgatagaagattggaaaaagtggataataatggtcatataaatcaagtcatgactactc |
195 |
Q |
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| T |
13308614 |
ttggaagaaggttggaagcagtggacaataatggtca---aaatcaaatcatgactactc |
13308670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 11096173 - 11096217
Alignment:
| Q |
89 |
tgatttgaatgatcttgcttggttgattgaccaaaatttgaagga |
133 |
Q |
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| T |
11096173 |
tgatttgagtgatctttcttggttgattgaccataatttgaagga |
11096217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 11106879 - 11106912
Alignment:
| Q |
100 |
atcttgcttggttgattgaccaaaatttgaagga |
133 |
Q |
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| T |
11106879 |
atcttgcttggttgattgaccacaatttgaagga |
11106912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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