View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4923_low_2 (Length: 373)
Name: NF4923_low_2
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4923_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 4 - 361
Target Start/End: Complemental strand, 41941998 - 41941640
Alignment:
| Q |
4 |
accagcaggtttcaaagtttctagaaaatttatttaaatnnnnnnnnntgtttttgttttctcatataaacaaaaagtttcaatttgaaaatccaatgaa |
103 |
Q |
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| T |
41941998 |
accagcaggtttcaaagtttctagaaaatttctttaaataaaaaaaaatgtttttgttttctcatataaacaaaaagtttcaatttgaaaatccaacgaa |
41941899 |
T |
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| Q |
104 |
tggcacgagtgtacgtatgcatgtatatggtactatttattttgtttatgcgtatgcaatcttggtccacatggttcattttcattctgcttgctttcca |
203 |
Q |
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| T |
41941898 |
tggcacgagtgtacgtatgcatgtatatggtactatttattttgtttatggttatgcaatcttggtccacatggttcattttcattctgcttgctttcca |
41941799 |
T |
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| Q |
204 |
tgtaagcagaaaaaagaaaggaaaaggagccaagatttgaacatgtaaaaggtac-nnnnnnngcctcgagcaaagagcaatgaaatcacaaggccaaca |
302 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41941798 |
tgtaaacagaaaaaagaaaggaaaaggagccaagatttgaacatgtaaaaggtacaaaaaaaagcctcgagcaaagagcaatgaaatcacaaggccaaca |
41941699 |
T |
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| Q |
303 |
cacatgcattaaataaatagataagcttattatgcatgagcgtgaattattgttttgat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41941698 |
cacatgcattaaataaatagataagcttattatgcatgagcgtgaattattgttttgat |
41941640 |
T |
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