View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4923_low_3 (Length: 370)

Name: NF4923_low_3
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4923_low_3
NF4923_low_3
[»] chr7 (2 HSPs)
chr7 (181-354)||(8179563-8179717)
chr7 (1-56)||(8179240-8179295)
[»] chr2 (2 HSPs)
chr2 (115-279)||(33662450-33662613)
chr2 (111-205)||(33662378-33662468)
[»] chr1 (4 HSPs)
chr1 (111-216)||(20014302-20014403)
chr1 (139-279)||(20014605-20014746)
chr1 (150-207)||(20014268-20014326)
chr1 (115-155)||(20014374-20014414)
[»] chr3 (5 HSPs)
chr3 (66-116)||(47444469-47444519)
chr3 (111-207)||(6524724-6524816)
chr3 (147-191)||(44364931-44364975)
chr3 (150-190)||(6524651-6524691)
chr3 (153-207)||(6524792-6524847)
[»] chr8 (1 HSPs)
chr8 (59-98)||(36130417-36130456)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 354
Target Start/End: Original strand, 8179563 - 8179717
Alignment:
Q  181 ttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagatagatggtttgtattcgtct 280  Q
    |||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||                  |||||||||    
T  8179563 ttgtttaattagaaacttaggatttgaatcatatgcagtcatgtatcatgcagttgttgatctcggtcgtttg------------------tattcgtct 8179644  T
Q  281 gcaagtactggaacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaat 354  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8179645 gcaagtgctg-aacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaat 8179717  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8179240 - 8179295
Alignment:
Q  1 tgcaaacaagtgtgtgaaataggagctagcaaccccacataactcttgctgacccg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8179240 tgcaaacaagtgtgtgaaataggagctagcaaccccacataactcttgctgacccg 8179295  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 279
Target Start/End: Original strand, 33662450 - 33662613
Alignment:
Q  115 aattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatat 214  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |||||| ||  ||    
T  33662450 aattggaaaattaagatttcacttatatgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattgaaaacttagaatttgactc--at 33662547  T
Q  215 gttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagat-agatggtttgtattcgtc 279  Q
    || | | ||||||||||||| ||| || || |||||||||  ||||| ||||||||||||||||||    
T  33662548 gtagccctgtatcatgcagtcgttaatctcagtcgtttgattgagatcagatggtttgtattcgtc 33662613  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 33662378 - 33662468
Alignment:
Q  111 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggattt 205  Q
    ||||| ||||||||| |||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||    
T  33662378 tttaatttggaaaataaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagattt 33662468  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 20014302 - 20014403
Alignment:
Q  111 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatc 210  Q
    ||||| |||||||||||||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||| ||    
T  20014302 tttaatttggaaaattaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagagttgactc 20014397  T
Q  211 atatgt 216  Q
    ||||||    
T  20014398 atatgt 20014403  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 20014605 - 20014746
Alignment:
Q  139 atatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgtt 238  Q
    ||||||| |||||||||||||||||||| |||||  |||||||||| |||||  ||||||||||||||| |||  ||| | ||||||||||||| | |||    
T  20014605 atatgtagtgcatttaatttaatttaatcaattgcttcgtttttgtttaattaaaaacttaggatttgactcaagtgtagccatgtatcatgcaatcgtt 20014704  T
Q  239 gatatcggtcgtttgaaggagat-agatggtttgtattcgtc 279  Q
     || ||| |||||||| ||||||  ||||| |||||||||||    
T  20014705 aatctcgatcgtttgatggagatctgatggattgtattcgtc 20014746  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 20014268 - 20014326
Alignment:
Q  150 atttaatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 207  Q
    ||||||||||||||||| |||||||  |||||||| ||| ||||||| |||||||||||    
T  20014268 atttaatttaatttaatcaattgtgatgtttttgtttaatttggaaaattaggatttga 20014326  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 20014374 - 20014414
Alignment:
Q  115 aattggaaaattaggatttgactcatatgtaatgcatttaa 155  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  20014374 aattggaaaattaagagttgactcatatgtagtgcatttaa 20014414  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 47444469 - 47444519
Alignment:
Q  66 aatttcaaattaacattagttagcaaagcaaaagtagtcaacgtctttaaa 116  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  47444469 aatttcaaatcaacattagttagcaaagcaaaagtggtcaacgtctttaaa 47444519  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 6524816 - 6524724
Alignment:
Q  111 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttga 207  Q
    ||||| |||||||||||||||||||||    | || |||||||||||||| ||||| |||||||||||||||||  |||||| || ||| |||||||    
T  6524816 tttaatttggaaaattaggatttgact----tttagtgcatttaatttaacttaatcaattgtgtcgtttttgttcaattggtaaattaagatttga 6524724  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 44364931 - 44364975
Alignment:
Q  147 tgcatttaatttaatttaataaattgtgtcgtttttgtgtaattg 191  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  44364931 tgcatttaatttaatttaatcaattgtgtcgtttttgtttaattg 44364975  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 6524691 - 6524651
Alignment:
Q  150 atttaatttaatttaataaattgtgtcgtttttgtgtaatt 190  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  6524691 atttaatttaatttaatcaattgtgtcgtttttgtttaatt 6524651  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 6524847 - 6524792
Alignment:
Q  153 taatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 207  Q
    |||||||||||||| |||||||| |||||||| ||| ||||||| |||||||||||    
T  6524847 taatttaatttaatcaattgtgttgtttttgtttaatttggaaaattaggatttga 6524792  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 36130417 - 36130456
Alignment:
Q  59 attgatgaatttcaaattaacattagttagcaaagcaaaa 98  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  36130417 attgatgaatttcaaattaacattaattagcaaagcaaaa 36130456  T

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