View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4923_low_7 (Length: 308)
Name: NF4923_low_7
Description: NF4923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4923_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 24295183 - 24295472
Alignment:
| Q |
1 |
tccaaaggtgagtaaacaaaaaatgcaatacccaaagtttgtagtctaactacggggtccaaagagtcattatctcacacatgctccttatgcaaggcat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24295183 |
tccaaaggtgagtaaacaaaaaatacaatacccaaagtttgtagtctaactacggggtccaaagggtcattatctcacacatgctccttatgcaaggcat |
24295282 |
T |
|
| Q |
101 |
tagagaaccattgttttctctagtgccaaactgaaatagtcatttttgcataagtttttatattatactagattgacataaatcgcacggagacaattac |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
24295283 |
tagaaaaccattgttttctctagtgccaaactcaaataatcatttttgcataagtttttatattacacaagattgacataaatcgcacggagacaattac |
24295382 |
T |
|
| Q |
201 |
aaatttacaaattatcaacaaaatgcaaaccaattagtaagaaattgacttttacctgcaa-gacgtaggttcaactctcatatactaac |
289 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
24295383 |
aaatttacaaattatcaacaaaacgcaaaccaattagtaagaaattgacttttaccggcaaggacgtaggttcaactctcgtatactaac |
24295472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University