View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4924-Insertion-1 (Length: 1038)
Name: NF4924-Insertion-1
Description: NF4924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4924-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Original strand, 37492963 - 37493483
Alignment:
| Q |
8 |
aatttgattggctaacttcaaacaattcgacacttgcctttctgatccctaaatttgtggatttcttttgaacaagtatacatgaggtcaaccgtacaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37492963 |
aatttgattggctaacttcaaacaattcgacacttgcctttctgatccctaaatttgtggatttcttttgaacaagtatacatgaggtcaaccgtacaat |
37493062 |
T |
|
| Q |
108 |
attnnnnnnnnnnnnngaaaggaacataatagaagggacaagaattgttattatcaatatcaatacataaataaagagaaaagaattgttaccaatcatc |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
37493063 |
attaaaaaacaaaaaagaaaggaacataatagaagggacaagaattgttattatcaatatcaatacatagataaagagaaaataattgttaccaatcatc |
37493162 |
T |
|
| Q |
208 |
aacttactccaaccnnnnnnnccatcaacttatttatttcttttgggaaaattaacactaacttaacttttaggcgggtcctcaaaa-----tatctcta |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
37493163 |
aacttactccaaccaaaaaaaccatcaacttatttatttcttttgggaaaattaacactaactt-----ttaggcgggtcctcaaaaatatttatctcta |
37493257 |
T |
|
| Q |
303 |
caattttagcatttctgtaccctttatgtaactaatgtctaatctctattcttataggtaaa-tatgattggttaaattgatcgatgaaggaggaatgtt |
401 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493258 |
caattttagcatttttgtaccctttatgtaactaatgtctaatctctattcttataggtaaaatatgattggttaaattgatcgatgaaggaggaatgtt |
37493357 |
T |
|
| Q |
402 |
agtagtaggattaaggagtaaggatcaaaatattgacctcttgcttaaaactcttttaccatttcaacttatatttttggcctactttggagattaatac |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493358 |
agtagtaggattaaggagtaaggatcaaaatattgacctcttgcttaaaactcttttaccgtttcaacttatatttttggcctactttggagattaatac |
37493457 |
T |
|
| Q |
502 |
tctctccatctcaaatttaagtgagg |
527 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37493458 |
tctctccatctcaaatttaagtgagg |
37493483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 597 - 1027
Target Start/End: Original strand, 37493489 - 37493924
Alignment:
| Q |
597 |
tttaccatggtgattgtacataactaagatacttcataaagatccctttttgtaagaatgtattatgcaatgattattactattcttgaaacaggaaagg |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493489 |
tttaccatggtgattgtacataactaagatacttcatcaagatccctttttataagagtgtattatgcaatgattattactattcttgaaacaggaaagg |
37493588 |
T |
|
| Q |
697 |
aaaattgtacccaactaaaatcttgatttgaaacatgaagagtccaataaaaaatttagaagtaaaaagtaatcaagtgctagggaggtacaactgtaat |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493589 |
aaaattgtacccaactaaaatcttgatttgaaacatgaagagtccaataaaaaatttagaagtaaaaagtaatcaagtgctagggaggtacaactgtaat |
37493688 |
T |
|
| Q |
797 |
attgatgtgtctttcttggcacaaagaaatcatactcgaattgatatgtgcattggtgatgatgatgaaggcatgtttgttcttgctatgcaatgtggat |
896 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493689 |
attgatgtgtctttcttggcacaaagaaatcatactcgaattgatatgtgcattgatgatgatgatgaaggcatgtttgttcttgctatgcaatgtggat |
37493788 |
T |
|
| Q |
897 |
gtgaggaaagctctgagcctacttcatgcactctcatggattcatgacttacgatgaccgsgttgtt-attttgtttttgatttg-aaaagatgattgac |
994 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
37493789 |
gtgagggaagctctgagcctacttcatgcactctcatggattcatgacttacgatgacagcgttgttaattttgtttttgatttgaaaaagatgattgac |
37493888 |
T |
|
| Q |
995 |
tattttaac-aatgg-agc-atgacattactgattt |
1027 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
37493889 |
tattttaacaaatggaagcaatgacattactgattt |
37493924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University