View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4924-Insertion-2 (Length: 1022)
Name: NF4924-Insertion-2
Description: NF4924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4924-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 3519498 - 3519892
Alignment:
| Q |
8 |
gcaacaactagtatgtcgcagttggatgctaactcaacaacatttgggtagtacttgtattttggttccagcttttgagttctagaatagtaacatattg |
107 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3519498 |
gcaacgactagtatgtcgcagttggatgctaactcaacaacatttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattg |
3519597 |
T |
|
| Q |
108 |
aacaattaaaaccttcagctcttttcgcaattgctgtgccaatccttcccagcccaataacaccaatggttttcccagagaactgcaaagacac----ta |
203 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| | |
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| T |
3519598 |
aacaattaaaaccttcagctctcttcgcaattgctgtgccaatccttcccagcccaataatgccaaccgttttaccagagaactgcaaagacacaattaa |
3519697 |
T |
|
| Q |
204 |
tttcttgttggaaaatgacggggaggaatactacgcgagaacacatataaccgattttaatgagcagtatggcacaattatatgattgaagttctgcaaa |
303 |
Q |
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||| | ||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3519698 |
tttgtcgttggaaaatggcggggaggaatactacatgagaatacatgtaaccgattttaatgagaagtatggcacaattatatgattgaagttttgcaaa |
3519797 |
T |
|
| Q |
304 |
ccttacaacatgatacatcactgtgtcgcattttaaatgtttttagccgtatcttgaaagcttacgaattgtaaatattgaaaaataagtggttt |
398 |
Q |
| |
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| T |
3519798 |
ccttacagcatgataaatcactgtgtcacattttaaatgtttttaaccgtttcttgaaagcttacaaactgtaaatattgaaaaataggtggttt |
3519892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 580 - 948
Target Start/End: Original strand, 3519903 - 3520276
Alignment:
| Q |
580 |
agaaaattgaattgggattaatgctgagaggtccagaagatattcacactctgaaatgtatgaattgtattaatcaagatgtgagttacataactatgac |
679 |
Q |
| |
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||||||||||||||||||| |||||||||||| |||| ||||||||| |||||| ||||||||||| | ||||| ||| ||||||||||||||||||||| |
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| T |
3519903 |
agaaaattgaattgggattcatgctgagaggtgcagatgatattcacgctctgatatgtatgaattatgttaataaagttgtgagttacataactatgac |
3520002 |
T |
|
| Q |
680 |
aagaaacggagataaaggatcctaaaagtgcatcgctatactccgaacctttatactgtggcaaatagcggacaaatgcagtcacaattgtgactgtgat |
779 |
Q |
| |
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|| | ||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
3520003 |
aaacagtggagataaaagatcttaaaagtgcaatactatactccgaacctttatattgtggcaaatagtgaacaaatgctgtcacaattgtgactgtgat |
3520102 |
T |
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| Q |
780 |
gccgctgcgattacctctaaaacttttatattacagctgcagttgcaaaccataatttaaaactatgttcctacttaaaacgtttttagtgta--gttgg |
877 |
Q |
| |
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||||||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3520103 |
gccgctgtgattacatctaaagcttttatattgcagctgcagttgcaaaccataatttaaaactatgttcctacttaaaacgtttttagtgtaagtttgg |
3520202 |
T |
|
| Q |
878 |
attgaaagcgataatggtggaataactgcaagctgcagcga-tttggtg--taaaactacagttcgaagtctca |
948 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||| |
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|
| T |
3520203 |
attgaaagtgagaatggtggaataactgcaagctgcaacgattttggtggtgaaaactacagttcaaagtctca |
3520276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 3479890 - 3480077
Alignment:
| Q |
8 |
gcaacaactagtatgtcgcagttggatgctaactcaacaacatttgggtagtacttgtattttggttccagcttttgagttctagaatagtaacatattg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| ||||||| |
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| T |
3479890 |
gcaacaactagtatgtcgcagttggatgctaactcaacaacatttggatagtacttgtattttgactcctgcttttgagttctagaatagtagcatattg |
3479989 |
T |
|
| Q |
108 |
aacaattaaaaccttcagctcttttcgcaattgctgtgccaatccttcccagcccaataacaccaatggttttcccagagaactgcaa |
195 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||| |
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| T |
3479990 |
aacaattaaaaccttcagctctcttggcaattgctgtgccaatcctgcccagcccaacaatgccaacggttttcccagagaactgcaa |
3480077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 3536912 - 3536725
Alignment:
| Q |
8 |
gcaacaactagtatgtcgcagttggatgctaactcaacaacatttgggtagtacttgtattttggttccagcttttgagttctagaatagtaacatattg |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3536912 |
gcaacaaccagtatgtcgcagttggatgctaactcaataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattg |
3536813 |
T |
|
| Q |
108 |
aacaattaaaaccttcagctcttttcgcaattgctgtgccaatccttcccagcccaataacaccaatggttttcccagagaactgcaa |
195 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
3536812 |
aacaattaaaaccttcagctctcttggcaactgctgtgccaatccttcccattccaataatgccaatggttttcccagagaactgcaa |
3536725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 3523046 - 3523232
Alignment:
| Q |
8 |
gcaacaactagtatgtcgcagttggatgctaactcaacaacatttgggtagtacttgtattttggttccagcttttgagttctagaatagtaacatattg |
107 |
Q |
| |
|
|||||||||||||| || ||||||||||| | |||||||||| |||| |||||||||||||||| ||| ||||||||||||| |||||||| |||||| |
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| T |
3523046 |
gcaacaactagtatatcacagttggatgcaagctcaacaacacttggatagtacttgtattttgactcctgcttttgagttctcgaatagtaggatattg |
3523145 |
T |
|
| Q |
108 |
aacaattaaaaccttcagctcttttcgcaattgctgtgccaatccttcccagcccaataacaccaatggttttcccagagaactgca |
194 |
Q |
| |
|
||| ||||| ||||||||||| || ||||| |||| ||||||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
3523146 |
gacagttaaagccttcagctctcttggcaatggctgcgccaatccttcccagcccaataatgccgacagttttcccagagaactgca |
3523232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 462 - 647
Target Start/End: Original strand, 3523632 - 3523821
Alignment:
| Q |
462 |
taagcaaaaacatttacaaactaagtcacacagctcggcctgtttctgggttgtaccca---tgattgaattcgtatcatgcgattcaac-gagattcac |
557 |
Q |
| |
|
|||||||||||||||| |||| ||||| || ||||||| ||||||||| |||||||| ||||||||||| ||||||| |||| ||| ||||||||| |
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|
| T |
3523632 |
taagcaaaaacatttagaaaccaagtcgtccaactcggccagtttctgggatgtacccaccatgattgaattcatatcatgtgatttaactgagattcac |
3523731 |
T |
|
| Q |
558 |
agcttccatttccattagattcagaaaattgaattgggattaatgctgagaggtccagaagatattcacactctgaaatgtatgaattgt |
647 |
Q |
| |
|
| || ||| ||||| |||||||| |||||||||||||||| ||| ||||| ||||| |||| ||||||||||||| |||||| |||||| |
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|
| T |
3523732 |
atctcccaactccatgagattcagcaaattgaattgggattcatgatgagaagtccaaaagagattcacactctgatatgtatcaattgt |
3523821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 465 - 640
Target Start/End: Original strand, 3480654 - 3480835
Alignment:
| Q |
465 |
gcaaaaacatttacaaactaagtcacacagctcggcctgtttctgggttgtacccatgat------tgaattcgtatcatgcgattcaacgagattcaca |
558 |
Q |
| |
|
||||||||||||| |||| |||||||||| || || |||| |||||| ||||||||||| ||||||| |||||| ||||||||||||||||||| |
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|
| T |
3480654 |
gcaaaaacatttagaaaccaagtcacacaactaggtctgtatctgggatgtacccatgaacatgactgaattcatatcatacgattcaacgagattcaca |
3480753 |
T |
|
| Q |
559 |
gcttccatttccattagattcagaaaattgaattgggattaatgctgagaggtccagaagatattcacactctgaaatgtat |
640 |
Q |
| |
|
|| ||| |||||| |||||||| |||||||||||||||| || |||||||| | | |||| ||||||||||||| |||||| |
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|
| T |
3480754 |
actcccaattccatgagattcagcaaattgaattgggattcattctgagaggccaaaaagagattcacactctgatatgtat |
3480835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 246 - 441
Target Start/End: Original strand, 3523332 - 3523527
Alignment:
| Q |
246 |
acatataaccgattttaatgagcagtatggcacaattatatgattgaagttctgcaaaccttacaacatgatac---atcactgtgtcgcattttaaatg |
342 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||||||||||||||| ||| ||||| |||||||| |||| ||||| |||||||||| |
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|
| T |
3523332 |
acatataaccaattttaatgag---tatg--acaattatatgattgaagttctacaacccttaaaacatgatgatggatcatcgtgtccaattttaaatg |
3523426 |
T |
|
| Q |
343 |
tttttagccgtatcttgaaagcttacgaattgtaaatattgaaaa--ataagtggtttgtcaatatcaagaatctgtgcaaacaagtagagcttctgcag |
440 |
Q |
| |
|
||||| | || | ||||||||||| |||||||| ||| ||||| |||||||||||||||| || ||| ||||||||||||||||| ||||||||| |
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|
| T |
3523427 |
tttttcactgttttctgaaagcttacaaattgtaattatggaaaaaaataagtggtttgtcaaactcgagagcctgtgcaaacaagtagaacttctgcag |
3523526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 3480147 - 3480217
Alignment:
| Q |
246 |
acatataaccgattttaatgagcagtatggcacaattatatgattgaagttctgcaaaccttacaacatgat |
317 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||||| |||||||| ||| |||| ||||||||| ||||||| |
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|
| T |
3480147 |
acatataaccaatgttaatgagcagtatgacacaacaatatgatt-aagctctgtaaaccttacgacatgat |
3480217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 3536648 - 3536581
Alignment:
| Q |
250 |
ataaccgattttaatgagcagtatggcacaattatatgattgaagttctgcaaaccttacaacatgat |
317 |
Q |
| |
|
|||||| |||||||||| |||| || ||| ||||||||||||||| | ||||| |||| ||||||||| |
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|
| T |
3536648 |
ataaccaattttaatgaacagtgtgacacgattatatgattgaagctttgcaacccttgcaacatgat |
3536581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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