View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4924-Insertion-3 (Length: 991)
Name: NF4924-Insertion-3
Description: NF4924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4924-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 8 - 564
Target Start/End: Complemental strand, 23431015 - 23430456
Alignment:
| Q |
8 |
gtttagaaataagtcagtaaagaaatggttaatatagttaaaaatttaaatgggtgttatgataatttaacagcccctgatttaatagttttctttggat |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23431015 |
gtttagaaataagtcagtaaagaaatagttaatatagttaaaaacttaaatgggtgttatgataatttaacaacccctgatttaatagttttctttggag |
23430916 |
T |
|
| Q |
108 |
ccatcccatataaacaaacaatccaagaaaatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatccta---atac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23430915 |
ccatcccatataaacaaacaatccaagaaaatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatcctcctcatac |
23430816 |
T |
|
| Q |
205 |
ataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatctacaacatcttgt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23430815 |
ataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcggcatctacaacatcttgt |
23430716 |
T |
|
| Q |
305 |
ccttgatttgcgatatttccaacatcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtgg |
404 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23430715 |
ccttgattcgcgatatttccaacatcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtgg |
23430616 |
T |
|
| Q |
405 |
aaggcaatgtcaggtgaacatgggttggagaataagtggtgggaagattcttaacctcttcagaaagcgccatggtaggaagagtatcaactaggagcat |
504 |
Q |
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| T |
23430615 |
aaggcaatgtcaggtgaacatgggttggagagtaagtggtgggaagattcttaacctcttcagaaagcgccatggtaggaagagtatcaactaggagcat |
23430516 |
T |
|
| Q |
505 |
gagcaacgctaaggtcatgactttggacatttttgtatgcaagagaaagtaataataagc |
564 |
Q |
| |
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| T |
23430515 |
gagcagcgctaaggtcatgactttggacatttttgtatgcaagagaaagtaataataagc |
23430456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 584 - 735
Target Start/End: Complemental strand, 23430468 - 23430316
Alignment:
| Q |
584 |
agtaataataagctttattgtagaagaaaaatggatttaattaatgtatgattctcgctttatatatagatgaaaaatgaatgcc--aaccaggattgtc |
681 |
Q |
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| T |
23430468 |
agtaataataagctttattgtagaagaaaa-tggatttaattaatgtatgattctcgttttatatatagatgaaaaatgaatgccccaaccaggattgtc |
23430370 |
T |
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| Q |
682 |
tggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
735 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23430369 |
tggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
23430316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 799 - 982
Target Start/End: Complemental strand, 23430252 - 23430058
Alignment:
| Q |
799 |
cagagttgattttgaccactctctgtgatttcttctcaagcaattttcccaaagagaatactttttacatttataatatggtattagaacatattctagt |
898 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |
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| T |
23430252 |
cagagttaattttgaccactctctgtaatttcttctcaagcaattttcccaaagagaatac-ttttacatttcaaatatggtattagaacatattctggt |
23430154 |
T |
|
| Q |
899 |
tttcctgaannnnnnnattctctcgtcgttgaccctgaagtctcg------------attcttctgctgaatatgatgtgaaatcatcactgattc |
982 |
Q |
| |
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||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23430153 |
tttcccgattttttttattctctcgtcgttgaccctaaagtctcgatgacatggataattcttctgctgaatatgatgtgaaatcatcactgattc |
23430058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 391 - 564
Target Start/End: Complemental strand, 23438687 - 23438513
Alignment:
| Q |
391 |
gcttctacgagtggaaggcaatgtcaggtgaacatgggttggagaataagtggtgggaagattcttaacctcttcagaaagcgccatggtaggaagagta |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | ||| ||||| ||||||||| ||| |||||||| ||||||| || | || |||| || |
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| T |
23438687 |
gcttctacgagtggaaggcaatgtcaggtgaagatgggtagaagagtaagtcgtgggaagagtctcaacctctttagaaagcaccgtagtgggaattgtc |
23438588 |
T |
|
| Q |
491 |
tcaactaggagcatgagcaacgctaaggtcatgactttggacattttt-gtatgcaagagaaagtaataataagc |
564 |
Q |
| |
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||||||||||||||||| || ||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||| |
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| T |
23438587 |
tcaactaggagcatgagtaatgctaaggccatgacttttgacatttttcttatgcaagagaaagtaaaaataagc |
23438513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 382 - 563
Target Start/End: Complemental strand, 23445431 - 23445250
Alignment:
| Q |
382 |
cccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatgggttggagaataagtggtgggaagattcttaacctcttcagaaagcgccatggta |
481 |
Q |
| |
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|||| |||||| ||||| |||||||||||||||| ||||| |||||| ||||| ||||||| ||||||| ||| |||||||||||||||| || | || |
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| T |
23445431 |
ccctagcatgcgtctaccggtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaacctcttcagaaagcaccgtagtg |
23445332 |
T |
|
| Q |
482 |
ggaagagtatcaactaggagcatgagcaacgctaaggtcatgactttggacatttttgtatgcaagagaaagtaataataag |
563 |
Q |
| |
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||||| ||||||||| | ||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
23445331 |
aaaagagacaaaactaggaggaggagcaacactaaggtcatggctttggacattttgatatgcaagagaaagtaaaaataag |
23445250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 192 - 304
Target Start/End: Complemental strand, 23438901 - 23438789
Alignment:
| Q |
192 |
attatcctaatacataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatc |
291 |
Q |
| |
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|||||||| ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| | ||| ||||||| |||| |||| ||||| |||| |
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| T |
23438901 |
attatccttatacataaactacataaaccagtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatc |
23438802 |
T |
|
| Q |
292 |
tacaacatcttgt |
304 |
Q |
| |
|
||| ||||||||| |
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|
| T |
23438801 |
tacgacatcttgt |
23438789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 584 - 735
Target Start/End: Complemental strand, 23438525 - 23438369
Alignment:
| Q |
584 |
agtaataataagctttattgtagaagaaaaatggat----ttaattaatgtatgattctcgctttatatatagatgaaaaatgaat----gccaaccagg |
675 |
Q |
| |
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||||| ||||||||||||| | |||||||||||||| |||| ||||| | ||||| |||||||||||||| ||||||||||| |||||||| | |
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| T |
23438525 |
agtaaaaataagctttattattgaagaaaaatggatgtgagtaatgaatgtctaattcttgctttatatatagaagaaaaatgaatggacgccaaccatg |
23438426 |
T |
|
| Q |
676 |
attgtctggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
735 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||||| ||||||||||||| |||||| |
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|
| T |
23438425 |
attctctgctgtcaaagtttgtt---agattaactcacatctataaaattagaagtcaac |
23438369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 802 - 893
Target Start/End: Complemental strand, 23438092 - 23438002
Alignment:
| Q |
802 |
agttgattttgaccactctctgtgatttcttctcaagcaattttcccaaagagaatactttttacatttataatatggtattagaacatatt |
893 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
23438092 |
agttaattttgaccaccatctgtaatttcttctcaagtaattttctcaatgagaata-tttttacatttctaatatggtattagaacatatt |
23438002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 23445637 - 23445571
Alignment:
| Q |
179 |
atcaacaaatcaaattatcctaatacataaagtacattaactagtataactattataatataactgg |
245 |
Q |
| |
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|||||||||| ||||||| || || |||||||||||| ||| | ||||||| ||||||||||||||| |
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|
| T |
23445637 |
atcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactgg |
23445571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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