View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4924-Insertion-4 (Length: 709)
Name: NF4924-Insertion-4
Description: NF4924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4924-Insertion-4 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 385 - 709
Target Start/End: Original strand, 34053441 - 34053758
Alignment:
| Q |
385 |
ttagcttagctttgttaatccttggatatgcattgtcattttgtcaacctcattttattctcagggcaa-tttagattagtttctgactttagaaacctc |
483 |
Q |
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| T |
34053441 |
ttagcttagctttgttaatctttggatatgcattgtca--------acctcattttattctcagggctagtttagattagtttctgactttagaaacctc |
34053532 |
T |
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| Q |
484 |
tcaattaaagaagtttatggggtgttcgcttacgaatgaatcctttataggtgttcatagagaagttaaatgagagtttctagaaataaaattagatgta |
583 |
Q |
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| T |
34053533 |
tcaattaaagaagtttatggggtgttcgcttacgaatgaatcctttataggtgttcatagagaagttaaatgagagtttctagaaataaaattagatgta |
34053632 |
T |
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| Q |
584 |
tgagctaatttctacttgtatgaaaaactcaactgttgcgaggttcttttagtatttcttatcctataagtatttttggacaagtttgagttattcaaac |
683 |
Q |
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| T |
34053633 |
tgagctaatttctacttgtatgaaaaactcaactgttgcaaggttcttttagtatttcttatcctataagtatttttggacaagtttgagttattcaaac |
34053732 |
T |
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| Q |
684 |
tgattcataatagatggagttggaca |
709 |
Q |
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| T |
34053733 |
tgattcataatagatggagttggaca |
34053758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 34053066 - 34053275
Alignment:
| Q |
8 |
ttctcaacctctcttcaccttcccaactcgatcctcttttggcttctcttcgttggcttatcagaatattcgtttctcgaaatctgactcatgatcagct |
107 |
Q |
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| T |
34053066 |
ttctcaacctctcttcatcttcccaactcgatcctcttttggcttctcttcgttggcttatcagaatattcgtttctcgaaatctcactcatgatcagct |
34053165 |
T |
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| Q |
108 |
tctcaaattctttcctcctcatcttccgctagagttgcagactattcttttactctcttttcagagtaatcgagattgctggaaccatgatttttctcaa |
207 |
Q |
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| T |
34053166 |
tctcaaattctttcctcctcatcttccgctacagttgcagactattcttttactctcttttcagaataatcgagattgctggaaccatgatttttctcaa |
34053265 |
T |
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| Q |
208 |
caacaggtca |
217 |
Q |
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| T |
34053266 |
caacaggtca |
34053275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 34053384 - 34053437
Alignment:
| Q |
304 |
atatttttgtaagttaaacaattactaaaaagatctacacaggtgattttcaat |
357 |
Q |
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| T |
34053384 |
atatttttgtaagttaaacaattactaaaaaaatctacacaggtgattttcaat |
34053437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 34053305 - 34053348
Alignment:
| Q |
245 |
acagaaatttaatgcaaaattcatatattacaaacactcacatg |
288 |
Q |
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| T |
34053305 |
acagaaatttaatgcaaaattcatatattacaaacactcacatg |
34053348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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