View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4924-Insertion-7 (Length: 392)

Name: NF4924-Insertion-7
Description: NF4924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4924-Insertion-7
NF4924-Insertion-7
[»] chr3 (8 HSPs)
chr3 (9-392)||(33607715-33608101)
chr3 (31-129)||(33626275-33626373)
chr3 (32-136)||(33615773-33615877)
chr3 (214-289)||(33615566-33615641)
chr3 (32-112)||(33594103-33594183)
chr3 (32-112)||(33601234-33601314)
chr3 (32-98)||(33586945-33587011)
chr3 (357-392)||(33620959-33620994)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 33608101 - 33607715
Alignment:
Q  9 cacaattcatttgtaacaaagtgaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33608101 cacaattcatttgtaacaaagtgaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagt 33608002  T
Q  109 gttaacttgccaccaatattgatagcagcatctggtgtactatccacagcaaataccacaccagccatttttgaaataccttttttgttttgtctatgga 208  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||  ||||||||    
T  33608001 gttaacttgccaacaatattgacagcagcatctggtgtactatccacagcaaataccccaccagccatttttgaaataccttttttttttcttctatgga 33607902  T
Q  209 tttcag---ttagtttaagtctgtgctggttagggtgctcataattagaagtagggcaactaatttataggccaagggtttgcatggtcgtttgtcttta 305  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33607901 tttcagtaattagtttaagtctgtgctggttagggtgctcataattagaagtagggcaactaatttataggctaagggtttgcatggtcgtttgtcttta 33607802  T
Q  306 actagatgtatgtggatgaaacatactaggacttttttattcctataatagaattgtcattctattaggcgataatcttgttaatca 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33607801 actagatgtatgtggatgaaacatactaggacttttttattcctataatagaattgtcattctattaggcgataatcttgttaatca 33607715  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 33626373 - 33626275
Alignment:
Q  31 gaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgttaacttgccaccaatattg 129  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| | | |||||| |||| ||||| ||||    
T  33626373 gaacctgaaattccgatgtcatatccaaaaagaaggccactggaagcagcaactatgcaggtaatgatgattaagaatgttaatttgctaccaacattg 33626275  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 33615877 - 33615773
Alignment:
Q  32 aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgttaacttgccaccaatattgat 131  Q
    ||||||||| ||| |  ||||||||| ||||||| |||| ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  33615877 aacctgaaactccgagatcatatccataaagaaggccaccggatgcagcaactatgcaggtaatgatgattgagagtgttaacttgccaccaatattgat 33615778  T
Q  132 agcag 136  Q
     ||||    
T  33615777 ggcag 33615773  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 33615641 - 33615566
Alignment:
Q  214 gttagtttaagtctgtgctggttagggtgctcataattagaagtagggcaactaatttataggccaagggtttgca 289  Q
    |||||||||| ||| |||||||| ||  |||||||||||||| | ||| ||||||||||||||||||||| |||||    
T  33615641 gttagtttaattctatgctggttgggacgctcataattagaaatggggaaactaatttataggccaaggggttgca 33615566  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 33594183 - 33594103
Alignment:
Q  32 aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta 112  Q
    |||||||||| |||||||||||||||||||  || ||||| || ||||||||||| || |||||||| | ||| |||||||    
T  33594183 aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta 33594103  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 33601314 - 33601234
Alignment:
Q  32 aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta 112  Q
    |||||||||| |||||||||||||||||||  || ||||| || ||||||||||| || |||||||| | ||| |||||||    
T  33601314 aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta 33601234  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 33587011 - 33586945
Alignment:
Q  32 aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgat 98  Q
    |||||||||| |||||||||||||||||||  || ||||| || ||||||||||| || ||||||||    
T  33587011 aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgat 33586945  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 392
Target Start/End: Complemental strand, 33620994 - 33620959
Alignment:
Q  357 aattgtcattctattaggcgataatcttgttaatca 392  Q
    ||||||||||||||||||||||| ||||||||||||    
T  33620994 aattgtcattctattaggcgatattcttgttaatca 33620959  T

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