View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4924-Insertion-8 (Length: 299)
Name: NF4924-Insertion-8
Description: NF4924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4924-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 33246665 - 33246952
Alignment:
| Q |
11 |
agaatgttgaattatttgccattatgacagcaggtttgctttgcatttaatgcttgatgataagtgagacttaaaatctannnnnnnnctcaggaaatta |
110 |
Q |
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| T |
33246665 |
agaatgttgaattatttgtcattgtgtcagcaggtttgctttgcatttaatgcttgatgataagtgagacttaaaagctatttgtttt-tcagtaaatta |
33246763 |
T |
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| Q |
111 |
agcactatacagctgcaaaggaatgcaaatgcagactaacataaagtaaaaacacttttcaactttcaaacatatctctataaacaatctccataaatag |
210 |
Q |
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| T |
33246764 |
agcactatacaaccggaaatgaatgcaaatgcagactaacataaagtaaagacacttttcaactttcaaacatatctctataaacaatctccataaatag |
33246863 |
T |
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| Q |
211 |
tggaagacgccttgctttgaagcattggtgtccaactacatttgtggtgagtttctccattccattaaaaagattcgagttttaaacct |
299 |
Q |
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| T |
33246864 |
tggaagacgccttgatttgaagcattggtgtccagctgcaactgtggtgagtttctccattccattgaaatgattccagttttaaacct |
33246952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 125 - 293
Target Start/End: Original strand, 20643402 - 20643570
Alignment:
| Q |
125 |
gcaaaggaatgcaaatgcagactaacataaagtaaaaacacttttcaactttcaaacatatctctataaacaatctccataaatagtggaagacgccttg |
224 |
Q |
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| T |
20643402 |
gcaaaggaatgcaaatgcagactaacataaagtaaaaacacttttcaactttcaaacatatctctataaacaatctccataaatagtggaagacgccttg |
20643501 |
T |
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| Q |
225 |
ctttgaagcattggtgtccaactacatttgtggtgagtttctccattccattaaaaagattcgagtttt |
293 |
Q |
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| T |
20643502 |
ctttgaagcattggtgtccaactgcatttgtggtgagtttctccattctattaaaaagattccagtttt |
20643570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 20643310 - 20643388
Alignment:
| Q |
8 |
catagaatgttgaattatttgccattatgacagcaggtttgctttgcatttaatgcttgatgataagtgagacttaaaa |
86 |
Q |
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| T |
20643310 |
catagaatgttgaattatttgccattatgacagcaggtttgctttgcatttaatgcttgatgataagtgagacttaaaa |
20643388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 105 - 299
Target Start/End: Complemental strand, 29373196 - 29372997
Alignment:
| Q |
105 |
aaattaagcactatacagctgcaaaggaatgcaaatgcagactaacataaagtaaaaa-cacttttcaactttc--aaacatatctctata--aacaatc |
199 |
Q |
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| T |
29373196 |
aaattaagcattttacagttagaaaggaatgcaaatgcagcctaacataaagtaaaaaacacttttcaacttccggagacatatctctatataaacaatc |
29373097 |
T |
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| Q |
200 |
tccataaatagtggaagacgccttgctttgaagcattggtgtccaactacatttgtggtgagtttctccattccattaaaaagattcgagttttaaacct |
299 |
Q |
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| T |
29373096 |
tccataaataatggatgacgccttgctttgaagcattgctgtccaactgcatttgtggtgggtttttccattccattaaaaagattcctgttttaaacct |
29372997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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