View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4924_high_3 (Length: 250)
Name: NF4924_high_3
Description: NF4924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4924_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18512102 - 18511868
Alignment:
| Q |
1 |
cacgataagctaaagcaactgcgtatttcatctgattctcccagtaagcaagacactgatcatgctcatacaaagaggtcctcgtgaattgttaatgcta |
100 |
Q |
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| T |
18512102 |
cacgataagcttaagcaactgcatatttcatctgattctcccagtaagcaagacactgatcatgctcatacaaagaggtcctcgtgaattgttaatgcta |
18512003 |
T |
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| Q |
101 |
gcttgtgttgatctagcactgaagcaagctgtgccctgctgtttgtcctgta-ttattgnnnnnnnnnnnnnnnnngattgcatggataatatatcatat |
199 |
Q |
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| T |
18512002 |
gcttgtgttgatctagcactgaagcaaactgtgccctgctgtttgtcctgtagatattgtttttattttttattttgattgcatggataatatatcatat |
18511903 |
T |
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| Q |
200 |
ggtgttgaagacataattacatttcacttgtttct |
234 |
Q |
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| T |
18511902 |
ggtgttgaagacataattacatttcacttgtttct |
18511868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 14517365 - 14517509
Alignment:
| Q |
5 |
ataagctaaagcaactgcgtatttcatctgattctcccagtaagcaagacactgatcatgctcatacaaagaggtcctcgtgaattgttaatgctagctt |
104 |
Q |
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| T |
14517365 |
ataagctgaagcaactacgtacttcatctgattctcctagcaagcaaggcactgatcatgctcatacatagaggtcctcgtgaattgttaatggtagctt |
14517464 |
T |
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| Q |
105 |
gtgttgatctagcactgaagcaagctgtgccctgctgtttgtcct |
149 |
Q |
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| T |
14517465 |
gttttgatctagcactgaagcagactgttccctgctatttatcct |
14517509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 6953466 - 6953392
Alignment:
| Q |
57 |
tgatcatgctcatacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaagctg |
131 |
Q |
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| T |
6953466 |
tgatcaagctcatacaaagaggtcctcatcaattgttaatgctaccttgtttagatcaagcaatgaagcaggctg |
6953392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 6920298 - 6920247
Alignment:
| Q |
55 |
actgatcatgctcatacaaagaggtcctcgtgaattgttaatgctagcttgt |
106 |
Q |
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| T |
6920298 |
actgatcatgctcatacaaagaggttctcatcaactgttaatgctaccttgt |
6920247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 6944500 - 6944430
Alignment:
| Q |
56 |
ctgatcatgctcatacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagca |
126 |
Q |
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| T |
6944500 |
ctgatcatgctcatataaagaggtcctcatcaactgttaattctaccttgttttgatgaagcaatgaagca |
6944430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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