View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4924_low_4 (Length: 239)
Name: NF4924_low_4
Description: NF4924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4924_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 18512172 - 18512401
Alignment:
| Q |
2 |
ctaaaaaatccatataatataacttatataattgttgaaaccttgatcaaaactctaatcaaaactacctaataccttatttaaaagtgatttcgcaatt |
101 |
Q |
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| T |
18512172 |
ctaaaaaatccatataatataacttatataattgttgaaaccttgatcaaaactctaatcaaaactacctaataccttatttaaaagtgattttgcaatt |
18512271 |
T |
|
| Q |
102 |
caaacatgttcattacctgtacaatttttaagcagttattatacataatatgacatggttaaacagttcattacatgtgctttcgtttgctactgtggcc |
201 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18512272 |
caaacatgttcattacctgtacaatttttaagtagttattatacataatatgacatggttaaacagttcattacatgtgctttcgtttgctactgtggcc |
18512371 |
T |
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| Q |
202 |
tcaaacattgaaaacctatacgcctatgct |
231 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
18512372 |
tcaaacattgaaaacctatacgcctctgct |
18512401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 1984785 - 1984818
Alignment:
| Q |
126 |
tttttaagcagttattatacataatatgacatgg |
159 |
Q |
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| T |
1984785 |
tttttaagcagttattacacataatatgacatgg |
1984818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 14517320 - 14517095
Alignment:
| Q |
4 |
aaaaaatccatataatataacttatataattgttgaaaccttgatcaaaactctaatcaaaactacctaataccttatttaaaagtgatttcgcaattca |
103 |
Q |
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|||||| |||||||||||||| ||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| |
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| T |
14517320 |
aaaaaacccatataatataac--atacaatagttgaaaacttgatcaaaactctaaacaaaactacctaataccttatttaaaagtgattttggaattca |
14517223 |
T |
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| Q |
104 |
aacatgttcattacctgtacaatttttaagcagttattatacataatatgacatggttaaacagttcattacatgtgctttcgtttgctactgtggcctc |
203 |
Q |
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||||||||||| |||| ||| |||||||| |||||||| | ||||||||||||||||||| || || |||| ||||||||| ||||||| ||||| ||| |
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| T |
14517222 |
aacatgttcatcacctctactatttttaaatagttattacatataatatgacatggttaaaaagatcgttacctgtgctttcttttgctattgtgggctc |
14517123 |
T |
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| Q |
204 |
aaacattgaaaacctatacgcctatgct |
231 |
Q |
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||||||||| ||||||||| ||| |||| |
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| T |
14517122 |
aaacattgagaacctatacacctttgct |
14517095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 14522179 - 14522081
Alignment:
| Q |
134 |
cagttattatacataatatgacatggttaaacagttcattacatgtgctttcgtttgctactgtggcctcaaacatt-gaaaacctatacgcctatgct |
231 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||| |||||||||||| ||| |||| |
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| T |
14522179 |
cagttattacacataatatgacatggttaaacagttcattacatttgctttcttttgctattgtgggctcaaacattggaaaacctatacacctctgct |
14522081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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