View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4925-Insertion-1 (Length: 564)
Name: NF4925-Insertion-1
Description: NF4925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4925-Insertion-1 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 2990969 - 2990659
Alignment:
| Q |
8 |
gtacgaaccaaaacaaacaacattgtaatcatacatgaaccttgagcagccataagaccaaaccacaaacctttgaaatcaaatccagcaaagaaactca |
107 |
Q |
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| T |
2990969 |
gtacgaaccaaaacaaacaacattgtaatcatacatgaaccttgagcagccataagaccaaaccacaaacctttgaaatcaaatccagcaaagaaactca |
2990870 |
T |
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| Q |
108 |
accaaactgcaacaggcattcccacaagataaaaacaacctaaatttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacagt |
207 |
Q |
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| T |
2990869 |
accaaactgcaacaggcattcccacaagataaaaacaacctaaatttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacagt |
2990770 |
T |
|
| Q |
208 |
tgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaacgcaattatttgtggatcacttgtgaacatagtagcccaa |
307 |
Q |
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| T |
2990769 |
tgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaacgcaattatttgtggatcacttgtgaacatagtagcccaa |
2990670 |
T |
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| Q |
308 |
atgtttctaac |
318 |
Q |
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| T |
2990669 |
atgtttctaac |
2990659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 366 - 564
Target Start/End: Complemental strand, 2990611 - 2990412
Alignment:
| Q |
366 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaa-ctcaaagaagaaggaaa |
464 |
Q |
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| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaa |
2990512 |
T |
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| Q |
465 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
564 |
Q |
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| T |
2990511 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
2990412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 28505456 - 28505530
Alignment:
| Q |
194 |
acaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaac |
268 |
Q |
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| T |
28505456 |
acaccacaaccggttgtttggggacaatttccgagctcgcaaagtccaacaattggtaacacaatagatgttaac |
28505530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 45845341 - 45845519
Alignment:
| Q |
65 |
ccaaaccacaaacctttgaaatcaaatccagcaaagaaactcaaccaaactgcaacaggcattcccacaagataaaaacaacctaaatttatatttgcgc |
164 |
Q |
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|||| ||||||||||| |||||||| ||| || | ||| ||||||| ||| || |||||||| |||| ||||||||||| ||||| |||||||| | |
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| T |
45845341 |
ccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgccactggcattccaacaatgtaaaaacaaccaaaattgatatttgcac |
45845440 |
T |
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| Q |
165 |
ctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctat |
243 |
Q |
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| T |
45845441 |
ctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacatagccctat |
45845519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 560
Target Start/End: Original strand, 45845643 - 45845837
Alignment:
| Q |
367 |
gagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacac-caaactcaaagaagaaggaaaa |
465 |
Q |
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||||||||| ||||||| ||||||||||||| ||| |||| ||||||||||| || |||||||| || ||||||| ||||| | || || |||||| |
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| T |
45845643 |
gagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgatggaaaa |
45845742 |
T |
|
| Q |
466 |
atgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttc |
560 |
Q |
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| T |
45845743 |
atatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaaaatcatgatttc |
45845837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 107 - 315
Target Start/End: Complemental strand, 24734 - 24526
Alignment:
| Q |
107 |
aaccaaactgcaacaggcattcccacaagataaaaacaacctaaatttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacag |
206 |
Q |
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|||||||| | ||| |||||||| || ||||||||||||||||| || ||||| || || | ||| ||||| || ||||| || | ||||||||| | | |
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| T |
24734 |
aaccaaaccgaaaccggcattccgacgagataaaaacaacctaagttgatattagcaccaactttaggccttgctgttcctctaagaacaccacagcctg |
24635 |
T |
|
| Q |
207 |
ttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaacgcaattatttgtggatcacttgtgaacatagtagccca |
306 |
Q |
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||||||| ||||| || || || ||||||| |||||||| || || |||||||||||||| ||||| |||| | || ||||||||||| ||||||| |
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| T |
24634 |
ttgtttgaggacagttacctagttcacataaacctataattggcaaaaccattgatgttaaagcaatgatttctttgtcttttgtgaacatactagccca |
24535 |
T |
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| Q |
307 |
aatgtttct |
315 |
Q |
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|||||||| |
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| T |
24534 |
catgtttct |
24526 |
T |
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