View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4925-Insertion-2 (Length: 436)

Name: NF4925-Insertion-2
Description: NF4925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4925-Insertion-2
NF4925-Insertion-2
[»] chr4 (7 HSPs)
chr4 (7-346)||(9057955-9058294)
chr4 (7-147)||(9128234-9128374)
chr4 (372-436)||(9058322-9058386)
chr4 (195-346)||(48293355-48293506)
chr4 (289-346)||(3349859-3349916)
chr4 (311-346)||(5122327-5122362)
chr4 (264-346)||(32223260-32223341)
[»] chr8 (1 HSPs)
chr8 (239-346)||(29914539-29914647)
[»] chr3 (4 HSPs)
chr3 (233-346)||(21238061-21238175)
chr3 (194-276)||(55467662-55467744)
chr3 (179-339)||(38651945-38652105)
chr3 (212-276)||(40483921-40483985)
[»] chr2 (3 HSPs)
chr2 (234-346)||(1331030-1331143)
chr2 (291-346)||(6946495-6946548)
chr2 (298-346)||(17762832-17762880)
[»] chr7 (3 HSPs)
chr7 (265-339)||(46147272-46147347)
chr7 (289-346)||(29628184-29628240)
chr7 (194-244)||(11834551-11834601)
[»] chr5 (2 HSPs)
chr5 (221-346)||(733972-734098)
chr5 (264-346)||(27571985-27572067)
[»] chr1 (4 HSPs)
chr1 (194-265)||(2490059-2490130)
chr1 (194-346)||(35980222-35980370)
chr1 (264-346)||(35992545-35992628)
chr1 (290-346)||(32910313-32910369)
[»] chr6 (3 HSPs)
chr6 (193-346)||(9909047-9909201)
chr6 (289-346)||(14564514-14564571)
chr6 (265-338)||(28610674-28610747)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 9057955 - 9058294
Alignment:
Q  7 aacatgaatgataaattctacacttgagtcaatatggcgtcaatcatatatttcagatatggtaagacattaaatctgaacattgaaagacccaaaatat 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9057955 aacatgaatggtaaattctacacttgagtcaatatggcgtcaatcatatatttcagatatggtaagacattaaatctgaacattgaaggacccaaaatat 9058054  T
Q  107 tgatattttataagtcctaaagtagttataaaaacataatatataaacttgtacaaatggtgtttgtggtgcggtttggtttggaaactaaaagttatcc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||||||||||||||||| || ||||||||||||||    
T  9058055 tgatattttataagtcctaaagtagttataaaaacataatatataagcttgtagcaatgatgtttgtggtgcggtttggtttcgagactaaaagttatcc 9058154  T
Q  207 aaactacaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaactatgcggtgtaggttggttcggttgttgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9058155 aaactacaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaactatgcggtgtaggttggttcggttgttgc 9058254  T
Q  307 gatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    ||| |||| ||||| |||||||||||||||||||||||||    
T  9058255 gattttttacgagagaatacaattttttgtttctaacatt 9058294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 9128234 - 9128374
Alignment:
Q  7 aacatgaatgataaattctacacttgagtcaatatggcgtcaatcatatatttcagatatggtaagacattaaatctgaacattgaaagacccaaaatat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  9128234 aacatgaatgataaattctacacttgagtcaatatggcgtcaatcatatatttcagatatggtaggacattaaatctgaacattgaaggacccaaaatat 9128333  T
Q  107 tgatattttataagtcctaaagtagttataaaaacataata 147  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  9128334 tgatattttataagtcctagagtagttataaaaacataata 9128374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 9058322 - 9058386
Alignment:
Q  372 caacttaattttcagtcgttttcaacaatgttttaagataatccgacattgcaatttattttcat 436  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  9058322 caacttaattttcagtcgttttcaacaatgtttcaagataatccaacattgcaatttattttcat 9058386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 346
Target Start/End: Complemental strand, 48293506 - 48293355
Alignment:
Q  195 taaaagttatccaaactacaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaacta-tgcggtgtaggttg 293  Q
    ||||||| |||| |||  |||| || ||||| ||| | ||||||||||||  |||| | ||| |||||||| || |||||||| | |||||| | |||||    
T  48293506 taaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtcttttaaaataaaatccgaaccaaaccaatgcggtttgggttg 48293407  T
Q  294 gttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    | ||||||| || | | |||| |||||||||||||||||||||||| ||||||    
T  48293406 gatcggttggtgaggtttttt-cgagacaatacaattttttgtttccaacatt 48293355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 3349916 - 3349859
Alignment:
Q  289 ggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||| || ||||||    
T  3349916 ggttggttcggttgttgaaattttttgcgagacaatactattttttgtgtccaacatt 3349859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 5122362 - 5122327
Alignment:
Q  311 ttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||| |||||||||||||||||||||||||||||||    
T  5122362 tttttcgagacaatacaattttttgtttctaacatt 5122327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 32223341 - 32223260
Alignment:
Q  264 aaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||||||||||||| | |||||| | |||| | ||||||| |||| | |||||  |||||||||||||||||||||| ||||||    
T  32223341 aaaccaaaccaaacaaatgcggtttgggttagatcggttgatgcggttttttg--agacaatacaattttttgtttccaacatt 32223260  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 29914647 - 29914539
Alignment:
Q  239 ttggttaagttgacgttttaaataaaaaccaaaccaaa-ctatgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtt 337  Q
    |||||| | ||||| ||| |||| ||||||||| |||| | |||| || |||| ||||||| |||||||||| ||||| |||||||||||||||||||||    
T  29914647 ttggtttatttgacttttaaaatgaaaaccaaatcaaatcaatgcagtttagggtggttcgattgttgcgattttttgtgagacaatacaattttttgtt 29914548  T
Q  338 tctaacatt 346  Q
    |||||||||    
T  29914547 tctaacatt 29914539  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 21238061 - 21238175
Alignment:
Q  233 tttggtttggttaagttgacgttttaaataaaaaccaaaccaaa-ctatgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattt 331  Q
    |||||||||||| | ||||| ||| |||| ||||||||| |||| | ||||||| |||  ||||||| |||||||| | ||||| ||||||||| |||||    
T  21238061 tttggtttggtttatttgacttttaaaatgaaaaccaaatcaaatcaatgcggtttagagtggttcgattgttgcggttttttgtgagacaatataattt 21238160  T
Q  332 tttgtttctaacatt 346  Q
    |||||||||||||||    
T  21238161 tttgtttctaacatt 21238175  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 55467744 - 55467662
Alignment:
Q  194 ctaaaagttatccaaactacaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaa 276  Q
    |||||||| |||| |||| ||||||| | ||||||| | ||||||||||||  |||||| ||| |||||||| || |||||||    
T  55467744 ctaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttgacttttaaaataaaatccgaaccaaa 55467662  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 339
Target Start/End: Complemental strand, 38652105 - 38651945
Alignment:
Q  179 ggtttggtttggaaactaaaagttatccaaactacaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaact 278  Q
    |||||||||| |||  ||||||| |||| ||   ||||||| |||| |||| | ||||||||||||  |||||| ||  |||||| | ||||||||||||    
T  38652105 ggtttggttttgaaggtaaaagtcatccgaatcgcaagataaaaaa-tatgcggtttggtttggttcggttgactttaaaaataatatccaaaccaaact 38652007  T
Q  279 -atgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttc 339  Q
     ||||||| | |||||| ||||||| |||| | |||| ||||||| ||   |||||||||||    
T  38652006 aatgcggtttgggttggatcggttgatgcggttttttccgagacattaattttttttgtttc 38651945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 40483921 - 40483985
Alignment:
Q  212 acaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaa 276  Q
    |||||||| ||| | ||| | |||||||||||| ||||||| ||| ||||||||| |||||||||    
T  40483921 acaagataaaaatgcatgcggtttggtttggttcagttgacttttaaaataaaaatcaaaccaaa 40483985  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 1331030 - 1331143
Alignment:
Q  234 ttggtttggttaagttgacgttttaaataaaaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaatttt 332  Q
    |||||||||||  |||||| ||| |||||||| ||||||||||| | || ||| | |||||| || |||| |||| | |||| |||||||||||||||||    
T  1331030 ttggtttggttcggttgacttttaaaataaaatccaaaccaaaccaatgtggtttgggttggatcagttggtgcggtttttttcgagacaatacaatttt 1331129  T
Q  333 ttgtttctaacatt 346  Q
    ||||||| ||||||    
T  1331130 ttgtttccaacatt 1331143  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 6946548 - 6946495
Alignment:
Q  291 ttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||||||||||| || ||| |||  |||||||||||||||||||||||| ||||||    
T  6946548 ttggttcggttggtgagattttt--cgagacaatacaattttttgtttccaacatt 6946495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 17762832 - 17762880
Alignment:
Q  298 ggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    ||||| |||| | |||| |||||||||||||||||||||||| ||||||    
T  17762832 ggttggtgcggtttttttcgagacaatacaattttttgtttccaacatt 17762880  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 46147272 - 46147347
Alignment:
Q  265 aaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttc 339  Q
    ||||||||||||| | |||||| || ||||| ||||||| |||||| |||| ||||||||||||||||||||||||    
T  46147272 aaccaaaccaaaccaatgcggtttacgttggatcggttggtgcgatttttttcgagacaatacaattttttgtttc 46147347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 29628184 - 29628240
Alignment:
Q  289 ggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||||| ||||||| |||||| |||| |||||||||||||||||||||||| ||||||    
T  29628184 ggttggatcggttggtgcgatttttt-cgagacaatacaattttttgtttccaacatt 29628240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 11834601 - 11834551
Alignment:
Q  194 ctaaaagttatccaaactacaagatagaaaagtatgtgatttggtttggtt 244  Q
    ||||||||||||| |||||||||||| | ||||||| | ||||||||||||    
T  11834601 ctaaaagttatccgaactacaagataaataagtatgcggtttggtttggtt 11834551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 734098 - 733972
Alignment:
Q  221 aaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaact-atgcggtgtaggttggttcggttgttgcgatgttttgcgag 319  Q
    ||||| ||||| ||||||||| ||  |||| | |||||||| |||| ||||||||||  ||| ||| |  || ||||||||||||| | | |||||||||    
T  734098 aaaagaatgtggtttggtttgattcggttggccttttaaattaaaatcaaaccaaaccgatgtggttttagtaggttcggttgttgaggttttttgcgag 733999  T
Q  320 acaatacaattttttgtttctaacatt 346  Q
    ||||||||| |||||||||| ||||||    
T  733998 acaatacaactttttgtttccaacatt 733972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 27572067 - 27571985
Alignment:
Q  264 aaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||||||||||||| | |||||| | |||||| ||||||| |||| | |||| |||||||||||||||||||||||| ||||||    
T  27572067 aaaccaaaccaaaccaatgcggtttgggttggatcggttggtgcggtttttt-cgagacaatacaattttttgtttccaacatt 27571985  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 2490130 - 2490059
Alignment:
Q  194 ctaaaagttatccaaactacaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaa 265  Q
    ||||||||||||| |||  ||||||| | ||||||| |||||||||||||| ||||||| ||| ||||||||    
T  2490130 ctaaaagttatccgaaccgcaagataaataagtatgcgatttggtttggttcagttgacttttaaaataaaa 2490059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 35980370 - 35980222
Alignment:
Q  194 ctaaaagttatccaaactacaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaactatgcggtgtaggttg 293  Q
    |||||||| |||| |||  |||| || ||||| ||||| |||||||| |||  |||||| ||| |||||||| |||||||||    || ||| | | ||     
T  35980370 ctaaaagtcatccgaaccgcaaggtaaaaaagcatgtggtttggttttgtttggttgacttttaaaataaaatccaaaccaa----tgtggtttggttta 35980275  T
Q  294 gttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    | ||||||| |||| | |||| |||||||||||||||||||||||| ||||||    
T  35980274 gatcggttggtgcggtttttttcgagacaatacaattttttgtttccaacatt 35980222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 35992628 - 35992545
Alignment:
Q  264 aaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||||||||||||||| |||||| | | |||| ||||||| |||| | |||| |||||||||||||||||||| ||| ||||||    
T  35992628 aaaccaaaccaaactaatgcggtttggtttggatcggttggtgcggtttttttcgagacaatacaattttttgcttccaacatt 35992545  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 32910369 - 32910313
Alignment:
Q  290 gttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    ||||| ||||||| || ||| |||| |||||| ||||||||||||||||| ||||||    
T  32910369 gttggatcggttggtgtgatttttttcgagacgatacaattttttgtttccaacatt 32910313  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 346
Target Start/End: Original strand, 9909047 - 9909201
Alignment:
Q  193 actaaaagttatccaaactacaagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaa-ctatgcggtgtaggt 291  Q
    |||||||||||||| |||  ||||||||||||| ||||||| || |||||||  |||| | ||| |||| |||  | ||||||| | ||||||  || ||    
T  9909047 actaaaagttatccgaaccgcaagatagaaaagcatgtgatatgttttggttcggttggcttttaaaatgaaagtcgaaccaaaccaatgcggcttatgt 9909146  T
Q  292 tggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||||| ||||||||| | ||| || ||||||||||| | ||| |||| ||||||    
T  9909147 tggttcagttgttgcggtttttcgcaagacaatacaactgtttctttccaacatt 9909201  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 14564514 - 14564571
Alignment:
Q  289 ggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 346  Q
    |||||| |||||||||||| | |||| | |||||||||||||||||||||| ||||||    
T  14564514 ggttggatcggttgttgcggttttttactagacaatacaattttttgtttcgaacatt 14564571  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 28610674 - 28610747
Alignment:
Q  265 aaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgttt 338  Q
    ||||||||||||||| |||||| | | ||||||||||||||||  | |||| | |||||||||||||||||||||    
T  28610674 aaccaaaccaaactaatgcggtttggattggttcggttgttgcagtttttt-caagacaatacaattttttgttt 28610747  T

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