View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4925_high_1 (Length: 534)
Name: NF4925_high_1
Description: NF4925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4925_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 44631258 - 44631758
Alignment:
| Q |
19 |
atatttatagaagaaattagtgataagtgtgaattccttccacttaactaagcaatcaaaataattccaatgcccaaaccttcagttatagtccaattgc |
118 |
Q |
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| T |
44631258 |
atatttaaagaagaaattagtgataagtgtgaattccttccacttaactaagcaatcaaaataattccaatgcccaaaccttcagttatagtccaattgc |
44631357 |
T |
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| Q |
119 |
tatctacgccactcttgcatcaaatcaacacccaacatatactccaatggtcaaaagcttaggattctcccataaatcataacgcttctgacaatcggta |
218 |
Q |
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| T |
44631358 |
tatctacgccactcttgcatcaaatcaacacccaacatatactccaatggtcaaaagcttaggattctcccataaatcataacgcttctgacaatcggta |
44631457 |
T |
|
| Q |
219 |
actacccaacgttcgacggttactgaattatgtcgttggtaagggatctccaagggctctgccaccatgattatgaggctctatgacaacacctataaac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44631458 |
actacccaacgttcgacggttactgaattatgtcgttggtaagggatctccaacggctctgccaccatgattatgaggctctatgacaacacctataaac |
44631557 |
T |
|
| Q |
319 |
gcgacccttcgttgtcccatcagttacacaatcttcctatcttaaaatctctcattttttgctttcttattaacttaaacatcagagtgcttgcatgtac |
418 |
Q |
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|| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44631558 |
gcaacccttcgttgttccatcagttacgcaatcttcctatcttaaaatctctcattttttgctttcttattaacttaaacatcagagtgcttgcatgtac |
44631657 |
T |
|
| Q |
419 |
cctaaactcgtaatcaacgttgttgatgcttgttgcatactgttctcctgatcaaaacagatcaactatgtaatggttgcaatttatttatcctcccttt |
518 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44631658 |
cctaaactcgtaatcaacgtcgttgatgcttgttgcatactgttctcctgatcaaaacagatcaactatgtaatggttgcaatttatttatcctcccttt |
44631757 |
T |
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| Q |
519 |
g |
519 |
Q |
| |
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| T |
44631758 |
g |
44631758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 35161873 - 35161839
Alignment:
| Q |
19 |
atatttatagaagaaattagtgataagtgtgaatt |
53 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35161873 |
atatttatagaagaaattagtgataagtgtgaatt |
35161839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 44798238 - 44798272
Alignment:
| Q |
19 |
atatttatagaagaaattagtgataagtgtgaatt |
53 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
44798238 |
atatttaaagaagaaattagtgataagtgtgaatt |
44798272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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