View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4925_high_3 (Length: 391)
Name: NF4925_high_3
Description: NF4925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4925_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 9057579 - 9057938
Alignment:
| Q |
17 |
gaagaaaaacaggttaattgttaagtggagaag-cagagatacatgggatgatgtcctaattgttcctttataaaggggcacacccaagtgtcttaaccg |
115 |
Q |
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| T |
9057579 |
gaagaaaaacaggttaattgttaattgcaagagacaaagatacatgggatgatgtcctaattgttcctttataaaggggcacacccaagtgtcttaaccg |
9057678 |
T |
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| Q |
116 |
tcaataccggccaaataggacacgtggcacaacctcatggaaacacgtatagccaccagatctctgatttttgaagtgatatttataagtgtgctttttg |
215 |
Q |
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| T |
9057679 |
tcaataccggccaaataggacacatggcacaacctcatggaaacacgtatagccaccaaatctctggtttttgaagtgatatttataagtgtgctttttg |
9057778 |
T |
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| Q |
216 |
tcaaatcttcttatcatgcattcaacacttatgtgttcacaattttggaaggtacatgtattatatctttgttggatagtgttactgcatctgacaagtt |
315 |
Q |
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| T |
9057779 |
tcaaatcttcttatcatgcattcaacacttatgtgttcacaattttggaaggtacatgtattatatctttgttggatagtgttactgcatctgacaagtt |
9057878 |
T |
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| Q |
316 |
aatggtgaaattagcaaacccatttctttcatccaaatcatgaattctttggttttaatt |
375 |
Q |
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| T |
9057879 |
aatggtgaaattagcaaacccatttctttcatccaaatcatgaattctttggttttaatt |
9057938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 9127858 - 9128217
Alignment:
| Q |
17 |
gaagaaaaacaggttaattgttaagtggagaag-cagagatacatgggatgatgtcctaattgttcctttataaaggggcacacccaagtgtcttaaccg |
115 |
Q |
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|||||||||||||||||||||||| || | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9127858 |
gaagaaaaacaggttaattgttaattgcaagagacaaagatacatgggatgatgtcctaattgttcctttataaaggggcacacccaagtgtcttaaccg |
9127957 |
T |
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| Q |
116 |
tcaataccggccaaataggacacgtggcacaacctcatggaaacacgtatagccaccagatctctgatttttgaagtgatatttataagtgtgctttttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9127958 |
tcaataccggccaaataggacacgtggcacaacctcatggaaacacgtatagccaccaaatctctggtttttgaagtgatatttataagtgtgctttttg |
9128057 |
T |
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| Q |
216 |
tcaaatcttcttatcatgcattcaacacttatgtgttcacaattttggaaggtacatgtattatatctttgttggatagtgttactgcatctgacaagtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9128058 |
tcaaatcttcttatcatgcattcaacacttatgtgttcacaattttggaaggtacatgtattatatctttgttggatagtgttcctgcatctgacaagtt |
9128157 |
T |
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| Q |
316 |
aatggtgaaattagcaaacccatttctttcatccaaatcatgaattctttggttttaatt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9128158 |
aatggtgaaattagcaaacccatttctttcatccaaatcatgaattctttggttttaatt |
9128217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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