View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4925_high_9 (Length: 335)
Name: NF4925_high_9
Description: NF4925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4925_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 111 - 326
Target Start/End: Original strand, 3960621 - 3960825
Alignment:
| Q |
111 |
aagacagcagcaaggcaaaaacccaaaccgcttgcagagctcccaacggactaatgaaacagtcctaaaaccaaatcacggcagaccccagggcccagac |
210 |
Q |
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| T |
3960621 |
aagatagcagcaaggcaaaaacccgaaccgcttgcagagctcccaacggactaatgaaatagtcccaaaaccgaatcaaggaaaaccccag-------ac |
3960713 |
T |
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| Q |
211 |
agcaacccctattacctcaaaaggcaatccttcggattccaaatccactgactcgtagaacaaacaagtcaagatgttcaacctctccaaactccaccgc |
310 |
Q |
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| T |
3960714 |
cgcgactcctattacctcaaaaggcaatccttcagattccacatccact----cgtagcacaaacaagtcaggatgttcaacctctccaaactccaccgc |
3960809 |
T |
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| Q |
311 |
taagataaaactttca |
326 |
Q |
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|||||||||||||||| |
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| T |
3960810 |
taagataaaactttca |
3960825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 3960230 - 3960316
Alignment:
| Q |
113 |
gacagcagcaaggcaaaaacccaaaccgcttgcagagctcccaacggactaatgaaacagtcctaaaaccaaatcacggcagacccc |
199 |
Q |
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| T |
3960230 |
gacagcagcaaggcagaaacccgagccgctggcagagctcccaactgactaatgaaacagtcccaaaaccgaatcacgtcaaacccc |
3960316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 3960562 - 3960604
Alignment:
| Q |
81 |
ggaaaaaacgcgctcagctctgcgcaaactaagacagcagcaa |
123 |
Q |
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| T |
3960562 |
ggaaaaaacgcgctcagctctgcgcaaactaagacagcagcaa |
3960604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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