View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4925_low_1 (Length: 646)
Name: NF4925_low_1
Description: NF4925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4925_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Original strand, 998319 - 998964
Alignment:
| Q |
1 |
agcacagaccagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctcttccaaatactcgagatg |
100 |
Q |
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| T |
998319 |
agcacagaccagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctcttccaaatactcgagatg |
998418 |
T |
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| Q |
101 |
aaggtgcaatgaaggcggtgcggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagtaaacttcgctagatcgtt |
200 |
Q |
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| T |
998419 |
aaggtgcaatgaaggcggtgcggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagtaaacttcgctagattgtt |
998518 |
T |
|
| Q |
201 |
atctatggctaaacaatatgatttgtggttgaaataaggaagatnnnnnnngaaaggatcacaagctacagaaaggatgcatagaatctcgaaaaacttt |
300 |
Q |
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| T |
998519 |
atctatggctaaacaatatgatttgtggttgaaataaggaagataaaaaaagaaaggatcacaagctacagaaaggatgcatagaatctcgaaaaacttg |
998618 |
T |
|
| Q |
301 |
ttccaataaagaagattcttatcttgaggatcaaatacttttttctgtgacactttaagatcttctggaaaaactccccaagtgactccacttttgagtg |
400 |
Q |
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| T |
998619 |
ttccaataaagaagattcttatcttgaggatcaaatacttttttctgtgacactttaagatcttctggaaaaactccccaagtgactccacttttgagtg |
998718 |
T |
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| Q |
401 |
atcttccaatattcattagtccatctgatccctttttcactccgactcgaaacgatttcgacgaannnnnnnncccgcgaccgggaataagaaaaggcaa |
500 |
Q |
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| T |
998719 |
atcttccaatattcattagtccatctgatccctttttcactccgactcgaaacgatttcgacgaattttttttcccgcgaccgggaataagaaaaggcaa |
998818 |
T |
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| Q |
501 |
acaatctaaattaaatcttaacttcttcatcccacttgagctagatggcattgacgaattggaatccaaatcatccaacctacatcatccactgtatatt |
600 |
Q |
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| T |
998819 |
acaatctaaattaaatcttaacttcttcatcccacttgagctagatggcattgacgaattggaatccaaatcatccaacctacatcatccactgtatatt |
998918 |
T |
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| Q |
601 |
agtctgaaagatgcttatgttaatagagtccctttccctcgagaac |
646 |
Q |
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| T |
998919 |
agtctgaaagatgcttatgttaatagagtccctttccctcgagaac |
998964 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 9549838 - 9549874
Alignment:
| Q |
77 |
cacctcttccaaatactcgagatgaaggtgcaatgaa |
113 |
Q |
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| T |
9549838 |
cacctcttccaaatactcgagaagaaggagcaatgaa |
9549874 |
T |
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