View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4926-Insertion-1 (Length: 929)

Name: NF4926-Insertion-1
Description: NF4926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4926-Insertion-1
NF4926-Insertion-1
[»] chr4 (21 HSPs)
chr4 (68-462)||(55261948-55262345)
chr4 (581-798)||(55261556-55261773)
chr4 (829-929)||(55261353-55261453)
chr4 (544-639)||(55261772-55261867)
chr4 (609-743)||(46734545-46734679)
chr4 (697-794)||(56337971-56338068)
chr4 (721-782)||(53569591-53569652)
chr4 (671-754)||(8081696-8081779)
chr4 (8-66)||(33108674-33108732)
chr4 (609-783)||(34104919-34105093)
chr4 (721-786)||(48029228-48029293)
chr4 (686-791)||(52731120-52731225)
chr4 (674-754)||(20543695-20543775)
chr4 (674-786)||(32348758-32348870)
chr4 (674-760)||(25124307-25124393)
chr4 (8-66)||(29591316-29591374)
chr4 (8-66)||(32217171-32217229)
chr4 (8-66)||(36395226-36395284)
chr4 (721-759)||(48498550-48498588)
chr4 (697-751)||(52814100-52814154)
chr4 (720-785)||(9690001-9690066)
[»] chr5 (8 HSPs)
chr5 (674-791)||(24177186-24177303)
chr5 (674-791)||(5909513-5909630)
chr5 (8-66)||(13661935-13661993)
chr5 (697-754)||(27679670-27679727)
chr5 (8-66)||(11957968-11958026)
chr5 (697-783)||(34337465-34337550)
chr5 (8-66)||(34650834-34650892)
chr5 (719-760)||(15440170-15440211)
[»] chr8 (11 HSPs)
chr8 (622-730)||(32095728-32095836)
chr8 (661-748)||(7671061-7671148)
chr8 (8-66)||(4537745-4537803)
chr8 (662-760)||(26658578-26658676)
chr8 (8-66)||(42034982-42035040)
chr8 (679-754)||(9492289-9492363)
chr8 (8-66)||(2805261-2805319)
chr8 (8-66)||(9063053-9063111)
chr8 (8-66)||(13643138-13643196)
chr8 (8-66)||(13743563-13743621)
chr8 (8-66)||(34228809-34228867)
[»] chr3 (14 HSPs)
chr3 (648-786)||(43171422-43171559)
chr3 (719-786)||(4963942-4964009)
chr3 (8-66)||(46352761-46352819)
chr3 (718-799)||(48743946-48744026)
chr3 (8-66)||(10617285-10617343)
chr3 (8-66)||(39074545-39074603)
chr3 (697-794)||(46189085-46189182)
chr3 (671-799)||(5789928-5790055)
chr3 (674-786)||(35216351-35216463)
chr3 (671-786)||(14306850-14306965)
chr3 (8-62)||(41993625-41993679)
chr3 (674-751)||(13700576-13700653)
chr3 (697-754)||(21548494-21548551)
chr3 (721-786)||(46249354-46249419)
[»] chr6 (11 HSPs)
chr6 (8-61)||(7851165-7851218)
chr6 (677-796)||(6936960-6937079)
chr6 (8-66)||(12525846-12525904)
chr6 (8-66)||(23402265-23402323)
chr6 (674-751)||(1364685-1364762)
chr6 (718-795)||(33095540-33095617)
chr6 (697-800)||(14586080-14586183)
chr6 (8-66)||(1840248-1840306)
chr6 (8-66)||(3515893-3515951)
chr6 (726-800)||(14620640-14620714)
chr6 (8-66)||(32929509-32929567)
[»] chr1 (16 HSPs)
chr1 (691-756)||(48380441-48380506)
chr1 (697-794)||(17823701-17823798)
chr1 (8-69)||(38162977-38163038)
chr1 (8-66)||(29657898-29657956)
chr1 (8-66)||(51065749-51065807)
chr1 (674-795)||(6092933-6093053)
chr1 (697-753)||(33150606-33150662)
chr1 (671-754)||(27394083-27394166)
chr1 (697-751)||(5287612-5287666)
chr1 (8-66)||(5694448-5694506)
chr1 (8-66)||(15227866-15227924)
chr1 (8-66)||(19031816-19031874)
chr1 (718-760)||(23765773-23765815)
chr1 (675-753)||(36379665-36379743)
chr1 (8-66)||(41730435-41730493)
chr1 (8-66)||(47010120-47010178)
[»] chr2 (13 HSPs)
chr2 (671-754)||(18634575-18634658)
chr2 (718-785)||(31265804-31265871)
chr2 (697-753)||(44941287-44941343)
chr2 (620-783)||(33280670-33280833)
chr2 (8-66)||(22567729-22567787)
chr2 (672-744)||(33584486-33584558)
chr2 (8-66)||(13574031-13574088)
chr2 (8-66)||(20553058-20553116)
chr2 (8-66)||(28601093-28601151)
chr2 (8-66)||(30486337-30486395)
chr2 (8-66)||(31390139-31390197)
chr2 (697-754)||(11195961-11196018)
chr2 (661-726)||(11547298-11547363)
[»] chr7 (10 HSPs)
chr7 (692-754)||(19512028-19512090)
chr7 (697-791)||(30802247-30802341)
chr7 (675-754)||(8753839-8753918)
chr7 (8-66)||(4628693-4628751)
chr7 (8-62)||(13064881-13064935)
chr7 (718-799)||(25944280-25944359)
chr7 (8-66)||(5239412-5239470)
chr7 (8-66)||(24438604-24438662)
chr7 (674-751)||(27096755-27096832)
chr7 (674-751)||(27181471-27181548)
[»] scaffold0057 (1 HSPs)
scaffold0057 (721-791)||(3430-3500)
[»] scaffold0045 (1 HSPs)
scaffold0045 (8-66)||(53358-53416)
[»] scaffold0048 (1 HSPs)
scaffold0048 (679-753)||(50909-50983)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 68 - 462
Target Start/End: Complemental strand, 55262345 - 55261948
Alignment:
Q  68 ttcatataaaagtgcatggagta--caaattgatagagatgtgagaaaggtgaggtagagagtatttgagatgacatgaata--ttataaagaaatattt 163  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||    
T  55262345 ttcatataaaagtgcatggagtatacaaattgatagagatgtgagaaaggtgaggtagagagtatttgagatgaaatgaaaagattataaagaaatattt 55262246  T
Q  164 gaaacgaactaaaataaataaagagaaaatgtgaatttataaatatttaatctaagcacaatcaaaaacnnnnnnncttctttcgcagttagtcctcagg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||    
T  55262245 gaaacgaactaaaataaataaagagaaaatgtgaatttataaatatttaatctaagcacaatcaaaaacttttcttcttcttttgcagttagtcctcagg 55262146  T
Q  264 tctttagaagaagggaatcataataattcgaagttagaccgaaagataagtttatccttagtaattgttgatggggtcggtgggggtactcctttgcttt 363  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||    
T  55262145 tctttagaagaaggggatcttaataattcgaagttagatcgaaagataagtatatccttagtaattgtcgacggggtcggtgggggtactcctctgcttt 55262046  T
Q  364 ctgtcgccacccgtcaaaatatctcaacaacactctttcatttctcgtttcaaaatgttttccccgtccccgtaatctttgtggggatcccatcaacat 462  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||    
T  55262045 ctgtccccacccgtcaaaatatcgcaacaacactctttcatttttcgtttcaaaaagtttt-cccgtccccataatctttgtggggatcccatcaacat 55261948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 581 - 798
Target Start/End: Complemental strand, 55261773 - 55261556
Alignment:
Q  581 aaatcacatataaaatacttgaacatattttggaatgctcgtaataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagtta 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55261773 aaatcacatataaaatacttgaacatattttggaatgctcgtaataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagtta 55261674  T
Q  681 aatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactg 780  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||    
T  55261673 aattccattcttattcgtggctgaaagctaacaaagccacttttgtgtatggttctcagagatggtggttggacccgttactttgactgggtatcgactg 55261574  T
Q  781 acctttatttttgtaatt 798  Q
    ||||||||||||||||||    
T  55261573 acctttatttttgtaatt 55261556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 829 - 929
Target Start/End: Complemental strand, 55261453 - 55261353
Alignment:
Q  829 acttgaacatatacatacaaatgttatttttagtaaattgttgagggacaaatggtataaattggggtgtctttttcccatctttgatccttgtcccgtt 928  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55261453 acttgaacatatacatacaaatgttatttttagtaaattgttgagggacaaatggtataaattggggtgtctttttcccatctttgatccttgtcccgtt 55261354  T
Q  929 g 929  Q
    |    
T  55261353 g 55261353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 544 - 639
Target Start/End: Complemental strand, 55261867 - 55261772
Alignment:
Q  544 gcattatgatattattgttatcttgtgacaaaaataaaaatcacatataaaatacttgaacatattttggaatgctcgtaataacatgatctttaa 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55261867 gcattatgatattattgttatcttgtgacaaaaataaaaatcacatataaaatacttgaacatattttggaatgctcgtaataacatgatctttaa 55261772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 609 - 743
Target Start/End: Original strand, 46734545 - 46734679
Alignment:
Q  609 tttggaatgctcgtaataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagttaaatttcatttttattcgtggctgaaagc 708  Q
    |||||||||  |||||||||||  || |||||||| | |||||| | || | ||||||||| || ||| |||||| | ||| ||||| ||||||||||||    
T  46734545 tttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaatttaaatataattcttattggtggctgaaagc 46734644  T
Q  709 taacaaagtcacttttgtgtatggttctcagagat 743  Q
    |||||| ||||||||||||||||||| ||||||||    
T  46734645 taacaatgtcacttttgtgtatggttttcagagat 46734679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 697 - 794
Target Start/End: Original strand, 56337971 - 56338068
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgt 794  Q
    |||||| ||||||||||| | ||||||||| ||||||||||| |||||||||| ||||  |||||||||  |||||||| |||||||| | |||||||    
T  56337971 gtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtatcgactgacctatgtttttgt 56338068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 721 - 782
Target Start/End: Complemental strand, 53569652 - 53569591
Alignment:
Q  721 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgac 782  Q
    ||||||||| |||||||||||||||||||||||| | || |||||  |||||||||||||||    
T  53569652 ttttgtgtacggttctcagagatggtggtcggaccctttactttgtttgggtatcaactgac 53569591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 671 - 754
Target Start/End: Complemental strand, 8081779 - 8081696
Alignment:
Q  671 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    ||||| ||||||| | | |||| || |||||||||||||||||| |||| |||||| |||||  |||| |||||||||||||||    
T  8081779 gaaaaggttaaatataactttttttggtggctgaaagctaacaatgtcaattttgtttatggcactcatagatggtggtcggac 8081696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 33108732 - 33108674
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||| ||||||| |||||||||| ||||| |  |||||||||||||||||||||    
T  33108732 aataattcctttttatggtatgcttaacccgtgccccggaggcaccggttagcaggacc 33108674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 783
Target Start/End: Complemental strand, 34105093 - 34104919
Alignment:
Q  609 tttggaatgctcgtaataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagttaaatttcatttttattcgtggctgaaagc 708  Q
    |||||||||  |||||||||| | |||| ||||| ||||||||| | |||| ||  ||||| |||||||| ||   | ||||| ||| |||| |||| ||    
T  34105093 tttggaatgaacgtaataacaagttcttcaataatgtccaaactcccattatagctcttatggaaaaagtgaagcataattttgattggtggttgaaggc 34104994  T
Q  709 taacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacc 783  Q
     || || | |  |||||| ||||||||||||||||||||||||||| | ||| | ||  |||||||| |||||||    
T  34104993 gaataatgcctgttttgtatatggttctcagagatggtggtcggaccctttgttatgtttgggtatcgactgacc 34104919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 721 - 786
Target Start/End: Complemental strand, 48029293 - 48029228
Alignment:
Q  721 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgaccttt 786  Q
    ||||||||| |||||||| |||||||||||||||   ||| ||||  |||||||||||||||||||    
T  48029293 ttttgtgtacggttctcaaagatggtggtcggaccatttgttttgtttgggtatcaactgaccttt 48029228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 791
Target Start/End: Complemental strand, 52731225 - 52731120
Alignment:
Q  686 catttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctt 785  Q
    ||||| |||| ||||||||||||||| || | ||||||||||| ||||  |  |||||||||||||||| |||||| |||  |||||||   ||||||||    
T  52731225 catttctattggtggctgaaagctaataatgccacttttgtgtttggtagttggagatggtggtcggacccgttgcattgcttgggtattggctgacctt 52731126  T
Q  786 tatttt 791  Q
    | ||||    
T  52731125 tgtttt 52731120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 674 - 754
Target Start/End: Complemental strand, 20543775 - 20543695
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    ||||||| |||||||| ||  | |||||| ||||||||||||| || |||| |||||||| | || |||||||||||||||    
T  20543775 aaagttagatttcattctttatggtggcttaaagctaacaaagccaattttatgtatggtacccaaagatggtggtcggac 20543695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 674 - 786
Target Start/End: Original strand, 32348758 - 32348870
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 773  Q
    ||||| |||||||| |  |||| ||||||||||||||| |  | ||  |||||||| |||||||||||||||||||||||  | ||| ||||  ||||||    
T  32348758 aaagtaaaatttcactcgtattggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggta 32348857  T
Q  774 tcaactgaccttt 786  Q
    || ||| ||||||    
T  32348858 tcgactaaccttt 32348870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 674 - 760
Target Start/End: Complemental strand, 25124393 - 25124307
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttg 760  Q
    |||||||| ||||||||||||| |||| |||| | |||  | || | ||||||||||| || |||||||||||| |||||| |||||    
T  25124393 aaagttaagtttcatttttattggtggttgaaggttaatgatgttagttttgtgtatgattgtcagagatggtgatcggacccgttg 25124307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 29591316 - 29591374
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||| ||||||||| ||||||||||| |||| |  | |||||||||||||||||||    
T  29591316 aataattaccttttatggtatgcttaactagtgccccgggggcaccggttagcaggacc 29591374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 32217171 - 32217229
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  ||||||||||||| |||||||    
T  32217171 aataattcccttttatggtatgcttaacctgtgccccggaggcaccggttaacaggacc 32217229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 36395226 - 36395284
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| || | |||||| ||||||||||||    
T  36395226 aataattcccttttatggtatgcttaaccagtgccctgggggcaccagttagcaggacc 36395284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 721 - 759
Target Start/End: Original strand, 48498550 - 48498588
Alignment:
Q  721 ttttgtgtatggttctcagagatggtggtcggactcgtt 759  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  48498550 ttttgtgtatggtactcagagatggtggtcggacccgtt 48498588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 751
Target Start/End: Complemental strand, 52814154 - 52814100
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 751  Q
    |||||| ||||| |||||| ||||||||||||| |||||||| || |||||||||    
T  52814154 gtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcg 52814100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 785
Target Start/End: Complemental strand, 9690066 - 9690001
Alignment:
Q  720 cttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctt 785  Q
    ||||||||||||||||||| |||||||||||| || | || |||||  |||||||| || ||||||    
T  9690066 cttttgtgtatggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgaccgacctt 9690001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 674 - 791
Target Start/End: Complemental strand, 24177303 - 24177186
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 773  Q
    ||||||||| || ||| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||  ||| ||    
T  24177303 aaagttaaacttaattcttattggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttggactcgttgttttgcttggata 24177204  T
Q  774 tcaactgacctttatttt 791  Q
    || |||||||||||||||    
T  24177203 tcgactgacctttatttt 24177186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 674 - 791
Target Start/End: Original strand, 5909513 - 5909630
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 773  Q
    ||||| |||||||| |  |||| |||||||||||| || || | |||||||||||| | |||||||||||||||||||||| | ||| ||||  ||||||    
T  5909513 aaagtaaaatttcactcgtattggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggta 5909612  T
Q  774 tcaactgacctttatttt 791  Q
    |||||| |||||| ||||    
T  5909613 tcaactaacctttgtttt 5909630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 13661935 - 13661993
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||| |||||||| |||||||||| ||||| |  |||||||||||||||||||||    
T  13661935 aataattctcttttatggtatgcttaacccgtgccccggaggcaccggttagcaggacc 13661993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 754
Target Start/End: Original strand, 27679670 - 27679727
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    |||||| || ||||| || |||||||||||||| |||||||||| |||||||||||||    
T  27679670 gtggcttaaggctaataatgtcacttttgtgtacggttctcagaaatggtggtcggac 27679727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 11958026 - 11957968
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||||||||||||  |||||||||  |||| | || |||||||||||||||||||    
T  11958026 aataattcccttttatggcatgcttaaccagtgccccaggggcaccggttagcaggacc 11957968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 783
Target Start/End: Complemental strand, 34337550 - 34337465
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacc 783  Q
    |||| ||||||| ||||||  ||||||||| | |||||||||||||||| ||||||||  |||||||||  || ||||| |||||||    
T  34337550 gtggttgaaagccaacaaaaccacttttgtatttggttctcagagatgg-ggtcggaccagttgctttgtttgagtatcgactgacc 34337465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 34650892 - 34650834
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  | |||||||||||||||||||    
T  34650892 aataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggacc 34650834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 760
Target Start/End: Original strand, 15440170 - 15440211
Alignment:
Q  719 acttttgtgtatggttctcagagatggtggtcggactcgttg 760  Q
    |||||||||||||||| |||||||||||||||| ||| ||||    
T  15440170 acttttgtgtatggttgtcagagatggtggtcgaactagttg 15440211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 622 - 730
Target Start/End: Original strand, 32095728 - 32095836
Alignment:
Q  622 taataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcact 721  Q
    ||||||||| ||||||||||| |||||| |||||| ||| |||||||||||||||||||||||| ||| ||||| || ||| ||||||||| ||||||||    
T  32095728 taataacataatctttaataatgtccaagctacaagtagggagcttattgaaaaagttaaatttaattcttattggtagctaaaagctaacgaagtcact 32095827  T
Q  722 tttgtgtat 730  Q
    |||| ||||    
T  32095828 tttgggtat 32095836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 748
Target Start/End: Complemental strand, 7671148 - 7671061
Alignment:
Q  661 agagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtgg 748  Q
    |||| |||| ||||| ||||||| | ||| ||||| |||| ||||||| ||||||| ||||||||||||||||| | |||||||||||    
T  7671148 agagattatagaaaaggttaaatataattcttattggtggttgaaagcaaacaaagccacttttgtgtatggttttaagagatggtgg 7671061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 4537803 - 4537745
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| | ||||||||||||||||||||||    
T  4537803 aataattcccttttatggtatgcttaacctgtgccccagaggcaccggttagcaggacc 4537745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 760
Target Start/End: Complemental strand, 26658676 - 26658578
Alignment:
Q  662 gagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttg 760  Q
    |||||||| ||||| || ||||||||||| || | |||| ||| |||||| || |||||||| || ||||||| ||||   ||||||||||||||||||    
T  26658676 gagcttatggaaaaggtaaaatttcatttatactggtggttgagagctaataatgtcactttagtatatggttgtcagcagtggtggtcggactcgttg 26658578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 42035040 - 42034982
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| |||||||||| ||||| | |||| ||||||||||| |||||    
T  42035040 aataattcccttttatggtatgcttaacacgtgccccagagacaccggttagcgggacc 42034982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 754
Target Start/End: Complemental strand, 9492363 - 9492289
Alignment:
Q  679 taaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    ||||||||||| ||  | |||||| || |||||||| ||||| |||||||| | ||||||||||||||||||||||    
T  9492363 taaatttcattctttatggtggcttaaggctaacaatgtcacatttgtgtacg-ttctcagagatggtggtcggac 9492289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 2805319 - 2805261
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  ||||||||||||||| |||||    
T  2805319 aataattcccttttatggtatgcttaaccagtgccccggaggcaccggttagccggacc 2805261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 9063111 - 9063053
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||||||||| |||||||||||||  |||| |  || ||||||||||||||||||    
T  9063111 aataattcccttttgtgatatgcttaaccagtgccccggaagcaccggttagcaggacc 9063053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 13643138 - 13643196
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||| |||||||| ||||||||||  |||| ||||  ||||||||||||||||||    
T  13643138 aataattctcttttatggtatgcttaaccagtgccctaggagcaccggttagcaggacc 13643196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 13743563 - 13743621
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||| |||||||| ||||||||||  |||| ||||  ||||||||||||||||||    
T  13743563 aataattctcttttatggtatgcttaaccagtgccctaggagcaccggttagcaggacc 13743621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 34228809 - 34228867
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  | |||||||||||||||||||    
T  34228809 aataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggacc 34228867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 786
Target Start/End: Original strand, 43171422 - 43171559
Alignment:
Q  648 aaactacaattagagagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtg 747  Q
    ||||| |||| ||| || |||| ||||| ||||||| | |||| |||| |||| |||| || ||||||| ||||||||||||||| ||||||||||||||    
T  43171422 aaactccaatcagaaagattatggaaaaggttaaatataatttctattggtggttgaa-gcaaacaaagccacttttgtgtatggctctcagagatggtg 43171520  T
Q  748 gtcggactcgttgctttgactgggtatcaactgaccttt 786  Q
    ||||||  |||| |||||  ||||||||  |||||||||    
T  43171521 gtcggatccgttactttgcttgggtatcggctgaccttt 43171559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 719 - 786
Target Start/End: Complemental strand, 4964009 - 4963942
Alignment:
Q  719 acttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgaccttt 786  Q
    ||||||||||| |||||||||||||||||||||||| | || ||||| ||||||||| ||||||||||    
T  4964009 acttttgtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgactgaccttt 4963942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 46352761 - 46352819
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| |||||||||| ||||| |  |||||||||||||||||||||    
T  46352761 aataattcccttttatggtatgcttaacccgtgccccggaggcaccggttagcaggacc 46352819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 718 - 799
Target Start/End: Original strand, 48743946 - 48744026
Alignment:
Q  718 cacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaatta 799  Q
    |||||||||||| |  ||||||||||||||||||||| | || ||||| |||| |||| |||||||||| ||||||||||||    
T  48743946 cacttttgtgtacgactctcagagatggtggtcggaccctttactttgcctggttatcgactgaccttt-tttttgtaatta 48744026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 10617343 - 10617285
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| |||||||||| ||||| |  | |||||||||||||||||||    
T  10617343 aataattcccttttatggtatgcttaacccgtgccccgggggcaccggttagcaggacc 10617285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 39074545 - 39074603
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| | || |||||||||||||||||||    
T  39074545 aataattcccttttatggtatgcttaaccagtgccccaggggcaccggttagcaggacc 39074603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 794
Target Start/End: Complemental strand, 46189182 - 46189085
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgt 794  Q
    |||||| |||| |||||| |||| |||||| ||||||||||| ||||||||||||||  | |||||||   |||||||||| |||  ||| |||||||    
T  46189182 gtggctaaaagttaacaatgtcaattttgtttatggttctcaaagatggtggtcggatcccttgctttatttgggtatcaattgatttttgtttttgt 46189085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 671 - 799
Target Start/End: Original strand, 5789928 - 5790055
Alignment:
Q  671 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgg 770  Q
    |||||||  ||||||||||| | || |||| | |||||||| ||   |||||||||||| || ||| |||||||||||| |||| | || ||||| ||||    
T  5789928 gaaaaagcaaaatttcatttgttttggtggttaaaagctaataacaccacttttgtgtacggctctgagagatggtggttggaccctttactttgtctgg 5790027  T
Q  771 gtatcaactgacctttatttttgtaatta 799  Q
    ||||  |||||||||| || |||||||||    
T  5790028 gtattgactgaccttt-ttattgtaatta 5790055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 674 - 786
Target Start/End: Original strand, 35216351 - 35216463
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 773  Q
    ||||||||||||||||| |  | |||||| || ||||| || | || ||||||||| ||| ||||||||||||||| |||| |  ||| |||  ||||||    
T  35216351 aaagttaaatttcatttgttatggtggcttaaggctaagaacgccaattttgtgtacggtactcagagatggtggttggaccctatgcattgtttgggta 35216450  T
Q  774 tcaactgaccttt 786  Q
    || ||||||||||    
T  35216451 tcgactgaccttt 35216463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 786
Target Start/End: Complemental strand, 14306965 - 14306850
Alignment:
Q  671 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgg 770  Q
    |||||||  |||| |||||| | || |||| | |||||||| ||  ||| ||||||||| ||||||||||||||||||||| || | ||  ||||  |||    
T  14306965 gaaaaagcaaaatatcatttgttttggtggttaaaagctaataacatcaattttgtgtacggttctcagagatggtggtcgaaccctttattttgtttgg 14306866  T
Q  771 gtatcaactgaccttt 786  Q
    ||||| ||||||||||    
T  14306865 gtatcgactgaccttt 14306850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 41993679 - 41993625
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcag 62  Q
    |||||||| |||||||| ||||||||||| || | ||| ||||||||||||||||    
T  41993679 aataattctcttttatggtatgcttaactagtaccctaaaggcaccggttagcag 41993625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 751
Target Start/End: Original strand, 13700576 - 13700653
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 751  Q
    ||||| ||||||||||| |  | |||||| |||| ||||||| ||||||||||||| | |||||| || |||||||||    
T  13700576 aaagtaaaatttcatttcttgtggtggcttaaagttaacaaaatcacttttgtgtacgtttctcaaagttggtggtcg 13700653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 754
Target Start/End: Original strand, 21548494 - 21548551
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    |||| ||||||||||||||  ||||||||| | ||||||||||||||| || ||||||    
T  21548494 gtggttgaaagctaacaaaaccacttttgtatttggttctcagagatgatgatcggac 21548551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 786
Target Start/End: Original strand, 46249354 - 46249419
Alignment:
Q  721 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgaccttt 786  Q
    ||||||||| ||||| || ||||||||||||||| | || |||||  |||||||| ||||||||||    
T  46249354 ttttgtgtacggttcccaaagatggtggtcggaccctttactttgtttgggtatcgactgaccttt 46249419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 7851218 - 7851165
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagca 61  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  7851218 aataattcccttttatggtatgcttaactcgtgccctagagacaccggttagca 7851165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 677 - 796
Target Start/End: Complemental strand, 6937079 - 6936960
Alignment:
Q  677 gttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatca 776  Q
    |||||||||||||  | || |||||||| |||||| || | || ||||||||| ||||||||||||||| |||| ||| |  || ||||  ||||||||     
T  6937079 gttaaatttcattcgttttggtggctgagagctaataacgccatttttgtgtacggttctcagagatggcggtcagaccctatgatttgtttgggtatcg 6936980  T
Q  777 actgacctttatttttgtaa 796  Q
    |||||||||| || ||||||    
T  6936979 actgacctttgttcttgtaa 6936960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 12525846 - 12525904
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||||||||||||||| |||| | || |  ||||||||||||||||    
T  12525846 aataattcccttttatgatatgcttaactagtgccccagggataccggttagcaggacc 12525904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 23402265 - 23402323
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||| ||||||||| |||||||||| ||||| |  |||||||||||||||||||||    
T  23402265 aataattaccttttatggtatgcttaacccgtgccccggaggcaccggttagcaggacc 23402323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 751
Target Start/End: Complemental strand, 1364762 - 1364685
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 751  Q
    ||||||||||||||||  |||| |||||| |||||||| || ||||  ||| |||||| |||||| ||||||||||||    
T  1364762 aaagttaaatttcattcgtattggtggcttaaagctaaaaatgtcatgtttctgtatgattctcacagatggtggtcg 1364685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 718 - 795
Target Start/End: Complemental strand, 33095617 - 33095540
Alignment:
Q  718 cacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgta 795  Q
    |||||||||||| |||||||| ||||||||||||||| | ||| | || || |||||| ||||||| || ||||||||    
T  33095617 cacttttgtgtacggttctcaaagatggtggtcggaccctttgttatgtctaggtatcgactgaccattctttttgta 33095540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 800
Target Start/End: Original strand, 14586080 - 14586183
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaa 796  Q
    |||||||||| |||| || | ||| |||||||||||| || ||||||||||||||||  | ||||||||  || ||||  | |||||||| ||| |||||    
T  14586080 gtggctgaaaactaataatgccacatttgtgtatggtgcttagagatggtggtcggatcctttgctttgtttgcgtattgattgacctttgtttctgtaa 14586179  T
Q  797 ttat 800  Q
    ||||    
T  14586180 ttat 14586183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 1840306 - 1840248
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||||||||||||||||| |||||  |||| |||||  |||||||||||| ||||    
T  1840306 aataattcccttttatgatatgtttaaccagtgccctagaaacaccggttagcaagacc 1840248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 3515893 - 3515951
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| |||| |||||  |||| | || |||||||||||||||||||    
T  3515893 aataattcccttttatggtatgtttaacctgtgccccaggggcaccggttagcaggacc 3515951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 726 - 800
Target Start/End: Original strand, 14620640 - 14620714
Alignment:
Q  726 tgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaattat 800  Q
    ||||||||||| ||||||||||||||||  | ||||||||  || |||||||  ||||||| ||| |||||||||    
T  14620640 tgtatggttcttagagatggtggtcggatcctttgctttgtttgcgtatcaatcgacctttgtttctgtaattat 14620714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 32929567 - 32929509
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  | |||||||||||||||||||    
T  32929567 aataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggacc 32929509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 691 - 756
Target Start/End: Complemental strand, 48380506 - 48380441
Alignment:
Q  691 ttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactc 756  Q
    ||||| |||||| ||||||||||| | |||| |||||||||||||| |||||||||||||||||||    
T  48380506 ttattggtggctaaaagctaacaacgccactcttgtgtatggttcttagagatggtggtcggactc 48380441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 697 - 794
Target Start/End: Complemental strand, 17823798 - 17823701
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgt 794  Q
    |||||| |||| ||| || ||||||||||| |  ||| |||| |||||||||| ||||||||| ||||| |||| |||| |||||||||| |||||||    
T  17823798 gtggctaaaagttaataatgtcacttttgttttaggtactcaaagatggtggttggactcgttactttgtctggatatcgactgacctttgtttttgt 17823701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 38162977 - 38163038
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggaccttt 69  Q
    ||||||||||||||||| |||||||||| ||||| |  | ||||||||||||||||||||||    
T  38162977 aataattcccttttatggtatgcttaacccgtgccccgggggcaccggttagcaggaccttt 38163038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 29657898 - 29657956
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| || | |||||||||||||||||||    
T  29657898 aataattcccttttatggtatgcttaaccagtgccctgggggcaccggttagcaggacc 29657956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 51065807 - 51065749
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| | || |||||||||||||||||||    
T  51065807 aataattcccttttatggtatgcttaaccagtgccccaggggcaccggttagcaggacc 51065749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 795
Target Start/End: Original strand, 6092933 - 6093053
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 773  Q
    |||||||| |||||||  |||| |||| |||| ||||| || ||||||||||||| || || ||||||||||||||||||  |||||   ||  ||||||    
T  6092933 aaagttaagtttcattcatattggtggttgaa-gctaataatgtcacttttgtgtttgattgtcagagatggtggtcggatccgttgtaatgtttgggta 6093031  T
Q  774 tcaactgacctttatttttgta 795  Q
    || |||||||| | ||||||||    
T  6093032 tcgactgacctatgtttttgta 6093053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 753
Target Start/End: Complemental strand, 33150662 - 33150606
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcgga 753  Q
    |||||| |||||||||||||||| |||| |||| ||| |||| ||||||||||||||    
T  33150662 gtggcttaaagctaacaaagtcaattttatgtacggtactcaaagatggtggtcgga 33150606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 754
Target Start/End: Original strand, 27394083 - 27394166
Alignment:
Q  671 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    ||||||||||| | |  || ||||| |||| |||| ||||| || ||||||||||| ||||| |||||| ||||||||||||||    
T  27394083 gaaaaagttaagtatacttcttattggtggttgaaggctaataatgtcacttttgtatatggctctcagtgatggtggtcggac 27394166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 751
Target Start/End: Complemental strand, 5287666 - 5287612
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 751  Q
    |||||| ||||| |||||| ||||||||||||| |||||||| || |||||||||    
T  5287666 gtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcg 5287612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 5694448 - 5694506
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  | |||||||||||||||||||    
T  5694448 aataattcccttttatggtatgcttaaccagtgctccgggggcaccggttagcaggacc 5694506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 15227866 - 15227924
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  |||||||||||||||| ||||    
T  15227866 aataattcccttttatggtatgcttaaccagtgccccggaggcaccggttagcaagacc 15227924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 19031874 - 19031816
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||| |||||||||||||||||||| ||| | |  ||| |||||||||||||||||    
T  19031874 aataatttccttttatgatatgcttaacccgtaccccggagacaccggttagcaggacc 19031816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 718 - 760
Target Start/End: Complemental strand, 23765815 - 23765773
Alignment:
Q  718 cacttttgtgtatggttctcagagatggtggtcggactcgttg 760  Q
    ||||||||||||||||||||| |||| |||||||||| |||||    
T  23765815 cacttttgtgtatggttctcaaagatagtggtcggacccgttg 23765773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 675 - 753
Target Start/End: Complemental strand, 36379743 - 36379665
Alignment:
Q  675 aagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcgga 753  Q
    ||||||||||||||| ||  |  ||| | |||| ||| || ||||| |||||||| |||||||||||||||||||||||    
T  36379743 aagttaaatttcattctttataatggtttaaagttaataatgtcacatttgtgtacggttctcagagatggtggtcgga 36379665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 41730435 - 41730493
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| | ||| |||| |||||||||||||    
T  41730435 aataattcccttttatggtatgcttaacaagtgccccagaagcactggttagcaggacc 41730493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 47010120 - 47010178
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||| |||||||| ||||||||||  |||| | || |||||||||||||||||||    
T  47010120 aataattctcttttatggtatgcttaaccagtgctccaggggcaccggttagcaggacc 47010178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 671 - 754
Target Start/End: Complemental strand, 18634658 - 18634575
Alignment:
Q  671 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    |||||||||||||||||||| | || ||| || |||||||| ||   ||| ||||||||||| |||||||||||||||||||||    
T  18634658 gaaaaagttaaatttcatttgttttggtgacttaaagctaataataccacgtttgtgtatggctctcagagatggtggtcggac 18634575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 718 - 785
Target Start/End: Complemental strand, 31265871 - 31265804
Alignment:
Q  718 cacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctt 785  Q
    |||||||||||||| |||||| ||||||||||||||| | || |||||  ||||||||||||||||||    
T  31265871 cacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatcaactgacctt 31265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 697 - 753
Target Start/End: Original strand, 44941287 - 44941343
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcgga 753  Q
    |||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||    
T  44941287 gtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcgga 44941343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 620 - 783
Target Start/End: Complemental strand, 33280833 - 33280670
Alignment:
Q  620 cgtaataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtca 719  Q
    ||||||||||   ||||||||||| | |||||| | |||  | ||||| | ||||| ||||||  | ||| || || |||| ||||||||||||||| ||    
T  33280833 cgtaataacagactctttaataacattcaaactcccattgtacagcttctggaaaaggttaaagataattcttttttgtggttgaaagctaacaaagcca 33280734  T
Q  720 cttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacc 783  Q
    |||||   | ||||||||| |||||||||||||||  |||||||||  ||| |||| |||||||    
T  33280733 cttttccatttggttctcacagatggtggtcggacctgttgctttgtttggatatcgactgacc 33280670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 22567729 - 22567787
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||| |||||||| |||||||||| ||||| | || |||||||||||||||||||    
T  22567729 aataattctcttttatggtatgcttaacccgtgctccaggggcaccggttagcaggacc 22567787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 672 - 744
Target Start/End: Original strand, 33584486 - 33584558
Alignment:
Q  672 aaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatg 744  Q
    |||| ||||||||| |||  | || ||||||||||||||| || | |||||||||||| ||||||||||||||    
T  33584486 aaaaggttaaattttattcgtttttgtggctgaaagctaataacgccacttttgtgtacggttctcagagatg 33584558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 13574088 - 13574031
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||| ||||||||| |||||||||| ||||| ||| || |||||||||||||||||    
T  13574088 aataatttccttttatggtatgcttaacccgtgcccta-agacaccggttagcaggacc 13574031  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 20553058 - 20553116
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  | |||||||||||||||||||    
T  20553058 aataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggacc 20553116  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28601093 - 28601151
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||| |||||||| ||||||||||  ||||||| |  ||||||||||||||||||    
T  28601093 aataattctcttttatggtatgcttaaccagtgcactgggagcaccggttagcaggacc 28601151  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 30486337 - 30486395
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  | |||||||||||||||||||    
T  30486337 aataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggacc 30486395  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 31390139 - 31390197
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| |||||||||| ||||| |  | ||||||| |||||||||||    
T  31390139 aataattcccttttatggtatgcttaacccgtgctccgggggcaccgattagcaggacc 31390197  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 754
Target Start/End: Complemental strand, 11196018 - 11195961
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    |||||| |||||||||||||||| |||| |||  ||| |||| |||||||||||||||    
T  11196018 gtggcttaaagctaacaaagtcaattttatgttcggtactcaaagatggtggtcggac 11195961  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 726
Target Start/End: Original strand, 11547298 - 11547363
Alignment:
Q  661 agagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgt 726  Q
    ||||||||| || ||||||||||||||||  |||| |||| |||| ||||| |||| |||||||||    
T  11547298 agagcttatggataaagttaaatttcattcatattggtggttgaaggctaataaagccacttttgt 11547363  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 692 - 754
Target Start/End: Complemental strand, 19512090 - 19512028
Alignment:
Q  692 tattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    |||| ||||||||||||||| || ||||  |||||||| ||||||||||||||||||||||||    
T  19512090 tattggtggctgaaagctaataacgtcatgtttgtgtacggttctcagagatggtggtcggac 19512028  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 697 - 791
Target Start/End: Original strand, 30802247 - 30802341
Alignment:
Q  697 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttt 791  Q
    ||||||||||||||| || | ||| |||||||| |||||||||||| ||||||||||| | ||| ||||  |||||||| ||| |||||| ||||    
T  30802247 gtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcgactaacctttgtttt 30802341  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 675 - 754
Target Start/End: Original strand, 8753839 - 8753918
Alignment:
Q  675 aagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 754  Q
    |||||||||||||||  |||| |||||| |||||||| || | ||  |||||||| |||| |||||||||||||||||||    
T  8753839 aagttaaatttcattcgtattggtggctcaaagctaaaaatgccatgtttgtgtacggttttcagagatggtggtcggac 8753918  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 4628693 - 4628751
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  ||||  ||| |||||||||||||||||||    
T  4628693 aataattcccttttatggtatgcttaaccagtgccttaggggcaccggttagcaggacc 4628751  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 13064935 - 13064881
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcag 62  Q
    ||||||||||||||||| ||||||||||  |||| |||| |||||||||||||||    
T  13064935 aataattcccttttatggtatgcttaaccagtgctctaggggcaccggttagcag 13064881  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 718 - 799
Target Start/End: Original strand, 25944280 - 25944359
Alignment:
Q  718 cacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaatta 799  Q
    |||||||||||| || |||||| ||||| |||| ||||| || ||||| |||||||| ||||||||||  ||||||||||||    
T  25944280 cacttttgtgtacggatctcagggatggaggtcagactctttactttgtctgggtatgaactgacctt--tttttgtaatta 25944359  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 5239412 - 5239470
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||| |||| |  | ||||| |||||||||||||    
T  5239412 aataattcccttttatggtatgcttaacttgtgcccccggggcactggttagcaggacc 5239470  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 24438604 - 24438662
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    ||||||||||||||||| ||||||||||  |||| |  | |||||||||||||||||||    
T  24438604 aataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggacc 24438662  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 751
Target Start/End: Complemental strand, 27096832 - 27096755
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 751  Q
    ||||||||||||||||  |  | |||||| ||||| ||||||  |||||||||||| |||||||| || |||||||||    
T  27096832 aaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtggtcg 27096755  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 751
Target Start/End: Original strand, 27181471 - 27181548
Alignment:
Q  674 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 751  Q
    ||||||||||||||||  |  | |||||| ||||| ||||||  |||||||||||| |||||||| || |||||||||    
T  27181471 aaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtggtcg 27181548  T

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Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 721 - 791
Target Start/End: Original strand, 3430 - 3500
Alignment:
Q  721 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttt 791  Q
    |||||| |||||||| || ||||||||||||||| ||||| ||||  |||||||| |||||||||| ||||    
T  3430 ttttgtttatggttcacatagatggtggtcggacccgttgatttgtttgggtatcgactgacctttgtttt 3500  T

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Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 53416 - 53358
Alignment:
Q  8 aataattcccttttatgatatgcttaactcgtgcactagaggcaccggttagcaggacc 66  Q
    |||||||| |||||||| ||||||||||| |||| |  |||||||||||||||||||||    
T  53416 aataattctcttttatggtatgcttaactagtgccccggaggcaccggttagcaggacc 53358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 753
Target Start/End: Original strand, 50909 - 50983
Alignment:
Q  679 taaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcgga 753  Q
    ||||||||||| ||  | |||||| || || ||||| | ||| |||||||| |||||||||||||||||||||||    
T  50909 taaatttcattctttatggtggcttaaggcaaacaaggccacatttgtgtaaggttctcagagatggtggtcgga 50983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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