View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4926-Insertion-4 (Length: 624)
Name: NF4926-Insertion-4
Description: NF4926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4926-Insertion-4 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 151 - 624
Target Start/End: Complemental strand, 2964492 - 2964017
Alignment:
| Q |
151 |
tttcacgctttagacaagtaaagttgtcacttcatttctctctcactccttgttatgatgtttctatcctttttcatatagaaaaaatattcatgtcaag |
250 |
Q |
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| T |
2964492 |
tttcacgctttagacaagtaaagttgtcacttcatttctctctcactctttgttatgatgtttctatcctttttcatatagaaaaaatattcatgtcaag |
2964393 |
T |
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| Q |
251 |
cttgtggatata-gcgaaaatcttctgagctgtgaaacatgcacttattctttacacacacatatactttaaacaagctttcttttgaggttataatact |
349 |
Q |
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| T |
2964392 |
cttgtggatataagcgaaaatcttctgagctgtgaaacatgcacttattctttacacacacatatactttaaacaagctttcttttgaggttataatact |
2964293 |
T |
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| Q |
350 |
tgcattatctttgtgtgattgtgcaggttagcccagttaatgatattgatgatattagattgtgagatgcaacccactgttgatgcaactcacagatggt |
449 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
2964292 |
tgcattatctttgtgtgattgtgcaggttaacccagttaatgatattgatgatattagattgtgagatgcaactcactattgatgcaactcacagatggt |
2964193 |
T |
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| Q |
450 |
aaatttattgaaactcatctactgttctattactttcagcttctaatggtgtcttgtgaatattataatatatataattttccttttgcctaataaattt |
549 |
Q |
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| T |
2964192 |
aaatttattgaaactcatctactgttctattgctttcagcttctaatggtgtcttgtgaatattataatatatataattttccttttgcctaataaattt |
2964093 |
T |
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| Q |
550 |
actgatt-nnnnnnntatatttattcgcaatctcaaacttttttattattgtatctgtacaactttcagttttgag |
624 |
Q |
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| T |
2964092 |
actgattaaaaaaaatatatttattcgcaatctcaaacttttttattattgtatcggtacaactttcagttttgag |
2964017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 2945286 - 2945119
Alignment:
| Q |
8 |
taagtgaggaactgtattttatgatttactttggtgcctaagagaggaactgtagagcatggataaatttttggatagtattaccattttcatgctcatt |
107 |
Q |
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| T |
2945286 |
taagtgagtaactatattttatgatttactttggtgcctaagagaggaaccgtagagtatggataaacttttgcatagtattaccattttcatgctcatt |
2945187 |
T |
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| Q |
108 |
ctcattaatcatattttatgcaagttactattaacattgtcattttcacgctttagacaagtaaagttgtcactt |
182 |
Q |
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| T |
2945186 |
ctcattaataacattttaagcaag-------taacattgtcattttcactctttagacaagtaaagatgtcactt |
2945119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 2964613 - 2964490
Alignment:
| Q |
8 |
taagtgaggaactgtattttatgatttactttggtgcctaagagaggaactgtagagcatggataaatttttggatagtatta--ccattt------tca |
99 |
Q |
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| T |
2964613 |
taagtgaggaactgtattttatgatttactttggtgcctaagagaggaacggtagagtatggataaatttttggatagtattaccccattttcatggtca |
2964514 |
T |
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| Q |
100 |
tgctcattctcattaatcatattt |
123 |
Q |
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| T |
2964513 |
tgctcattctcattaatcatattt |
2964490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 157 - 308
Target Start/End: Complemental strand, 2920140 - 2919990
Alignment:
| Q |
157 |
gctttagacaagtaaagttgtcacttcatttctctctcactccttgttatgatgtttctatcctttttcatatagaaaaaatattcatgtcaagcttgtg |
256 |
Q |
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|||||| |||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||||||| |
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| T |
2920140 |
gctttaaacaaataaagttgtcatttcttttctctcttactccttgttatgatgtttctatccttttcca-atagaaaaaggattcatgccaagcttgtg |
2920042 |
T |
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| Q |
257 |
gatatagcgaaaatcttctgagctgtgaaacatgcacttattctttacacac |
308 |
Q |
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|| | |||| ||||||| ||||||| |||||||||||||||| || ||||| |
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| T |
2920041 |
gaaagagcggaaatcttaggagctgtaaaacatgcacttattcgttccacac |
2919990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 340 - 431
Target Start/End: Complemental strand, 2919884 - 2919791
Alignment:
| Q |
340 |
ttataatacttgcattatctttgtgtgattgtgcaggttagcccagttaatgatattgat--gatattagattgtgagatgcaacccactgttg |
431 |
Q |
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| T |
2919884 |
ttataatacttgcattctctttgtgtgactgtgcaggttagcccacttaatgatattgataagatattagattgtgagatgcgtcccactgttg |
2919791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 503 - 624
Target Start/End: Complemental strand, 2943312 - 2943190
Alignment:
| Q |
503 |
ttgtgaatattataa--tatatataattttccttttgcctaataaatttactgattnnnnnnntatatttattcgcaatctcaaacttttttattattgt |
600 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||| | |||||||||||| |
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| T |
2943312 |
ttgtgaatattataacatatatatagttttccttttgcctaataaatttaatgattaaaaaaa-atatttatttgcaatctcaacttcttttattattgt |
2943214 |
T |
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| Q |
601 |
atctgtacaactttcagttttgag |
624 |
Q |
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| T |
2943213 |
atcggtacaattttcagttttgag |
2943190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 516
Target Start/End: Complemental strand, 2919697 - 2919625
Alignment:
| Q |
444 |
gatggtaaatttattgaaactcatctactgttctattactttcagcttctaatggtgtcttgtgaatattata |
516 |
Q |
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| T |
2919697 |
gatggtaaacttattgaaactcatctactgtttagttactttcagcttctaacggtgtcttgtgaatcttata |
2919625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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