View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4926-Insertion-5 (Length: 461)
Name: NF4926-Insertion-5
Description: NF4926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4926-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Original strand, 49266071 - 49266524
Alignment:
| Q |
8 |
ttagcattagaacttccaccaaaaattctcgatctccttgaccaccttttaggttaagctgtttcacagcaactacctgttgcacaaacatcatttttca |
107 |
Q |
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| T |
49266071 |
ttagcattagaacttccaccaaaaattctcgatctccttgaccaccttttaggtttagctgtttcacagcaactacctgttgcacaaacatcatttttca |
49266170 |
T |
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| Q |
108 |
ttcacacatatttaaaatgtacaatgttaatgaaatgaaaaattgaccactacatatagtttatgcttggatgaactagcatttgcaaaaaccaaaatct |
207 |
Q |
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| T |
49266171 |
ttcacacatatttaaaatgtacaatgttaatgaaatgaaaaattgaccactacatatagtttatgcttggatgaactagcatttgcaaaaaccaaaatct |
49266270 |
T |
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| Q |
208 |
ttgcaacagctatcacaacttacgtttttagcgctctcaaggtaacctttgtatacaggcccaaagcccccttcacctataaaacattccggcgcaaagt |
307 |
Q |
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| T |
49266271 |
ttgcaacagctatcacaacttacgtttttagcgctctcaaggtaacctttgtatacaggcccaaagcccccttcacctataaaacattccggcgcaaagt |
49266370 |
T |
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| Q |
308 |
tgttggttgcggctttaagctcttgtaatgtgaatgtacgtgcacgcggattggcttctgcctcatcacgcgtcttaggacccgagacactctccaattc |
407 |
Q |
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| T |
49266371 |
tattggttgcggctttaagctcttgtaatgtgaatgtatgtgcacgcggattggcttctgcctcatcacgcgtcttaggacccgagacactctccaattc |
49266470 |
T |
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| Q |
408 |
tgccttaggactcgaggaactcagcaattttgatctctctgcacaaatgataaa |
461 |
Q |
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| T |
49266471 |
tgccttaggactcgaggaactcagcaattttgatctctctgcacaaatgataaa |
49266524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 6601775 - 6601699
Alignment:
| Q |
10 |
agcattagaacttccaccaaaaattctcgatctccttgaccaccttttaggttaagctgtttcacagcaactacctg |
86 |
Q |
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| T |
6601775 |
agcatgagaacttccaccaaaaactctcgatttccttgaagtccattccggtcaagctgttttacagcaactacctg |
6601699 |
T |
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